diff --git a/NEWS.md b/NEWS.md index 5d24677959..253ed36636 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,6 +1,25 @@ # ggplot2 (development version) +This is a small release focusing on fixing regressions from 3.5.0 and +documentation updates. + +## Bug fixes + +* Fixed bug where discrete scales could not map aesthetics only consisting of + `NA`s (#5623) +* Fixed spurious warnings from `sec_axis()` with `breaks = NULL` (#5713). +* Patterns and gradients are now also enabled in `geom_sf()` + (@teunbrand, #5716). +* The default behaviour of `resolution()` has been reverted to pre-3.5.0 + behaviour. Whether mapped discrete vectors should be treated as having + resolution of 1 is controlled by the new `discrete` argument. +* Fixed bug in `guide_bins()` and `guide_coloursteps()` where discrete breaks, + such as the levels produced by `cut()`, were ordered incorrectly + (@teunbrand, #5757). + +## Improvements + * When facets coerce the faceting variables to factors, the 'ordered' class is dropped (@teunbrand, #5666). * `update_geom_defaults()` and `update_stat_defaults()` have a reset mechanism @@ -13,23 +32,12 @@ * `geom_step()` now supports `lineend`, `linejoin` and `linemitre` parameters (@teunbrand, #5705). * Fixed performance loss when the `.data` pronoun is used in `aes()` (#5730). -* Fixed bug where discrete scales could not map aesthetics only consisting of - `NA`s (#5623) * Facet evaluation is better at dealing with inherited errors (@teunbrand, #5670). -* Fixed spurious warnings from `sec_axis()` with `breaks = NULL` (#5713). -* Patterns and gradients are now also enabled in `geom_sf()` - (@teunbrand, #5716). * `stat_bin()` deals with non-finite breaks better (@teunbrand, #5665). * While axes in `coord_radial()` don't neatly fit the top/right/bottom/left organisation, specifying `position = "top"` or `position = "right"` in the scale will flip the placement of the radial axis (#5735) -* The default behaviour of `resolution()` has been reverted to pre-3.5.0 - behaviour. Whether mapped discrete vectors should be treated as having - resolution of 1 is controlled by the new `discrete` argument. -* Fixed bug in `guide_bins()` and `guide_coloursteps()` where discrete breaks, - such as the levels produced by `cut()`, were ordered incorrectly - (@teunbrand, #5757). * Theme elements that do not exist now throw warnings instead of errors (#5719). * Fixed bug in `coord_radial()` where full circles were not treated as such (@teunbrand, #5750). @@ -1470,7 +1478,7 @@ accompanying issue #2890. We recognise that this is a big change and if you're not already familiar with rlang, there's a lot to learn. If you are stuck, or need any help, - please reach out on . + please reach out on . * Error: Column `y` must be a 1d atomic vector or a list diff --git a/R/data.R b/R/data.R index 67da05994b..9634256f73 100644 --- a/R/data.R +++ b/R/data.R @@ -195,7 +195,7 @@ #' Housing sales in TX #' #' Information about the housing market in Texas provided by the TAMU -#' real estate center, \url{https://www.recenter.tamu.edu/}. +#' real estate center, \url{https://trerc.tamu.edu/}. #' #' @format A data frame with 8602 observations and 9 variables: #' \describe{ diff --git a/README.Rmd b/README.Rmd index 5a7278a9d2..693181ebae 100644 --- a/README.Rmd +++ b/README.Rmd @@ -102,7 +102,7 @@ There are two main places to get help with ggplot2: questions. It is also a great place to get help, once you have created a reproducible example that illustrates your problem. -[community]: https://community.rstudio.com/ +[community]: https://forum.posit.co/ [ggplot2-book]: https://ggplot2-book.org [gg-book]: https://www.amazon.com/Grammar-Graphics-Statistics-Computing/dp/0387245448/ref=as_li_ss_tl [so]: https://stackoverflow.com/questions/tagged/ggplot2?sort=frequent&pageSize=50 diff --git a/README.md b/README.md index 3ff7127756..71f0060465 100644 --- a/README.md +++ b/README.md @@ -108,8 +108,8 @@ specifically tailored to your needs. There are two main places to get help with ggplot2: -1. The [RStudio community](https://community.rstudio.com/) is a - friendly place to ask any questions about ggplot2. +1. The [RStudio community](https://forum.posit.co/) is a friendly place + to ask any questions about ggplot2. 2. [Stack Overflow](https://stackoverflow.com/questions/tagged/ggplot2?sort=frequent&pageSize=50) diff --git a/man/txhousing.Rd b/man/txhousing.Rd index 9260ba2c10..6f2c8f4500 100644 --- a/man/txhousing.Rd +++ b/man/txhousing.Rd @@ -22,6 +22,6 @@ txhousing } \description{ Information about the housing market in Texas provided by the TAMU -real estate center, \url{https://www.recenter.tamu.edu/}. +real estate center, \url{https://trerc.tamu.edu/}. } \keyword{datasets} diff --git a/revdep/README.md b/revdep/README.md index 1b349fca91..b6eff473f2 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,81 +1,34 @@ # Revdeps -## Failed to check (13) +## Failed to check (17) -|package |version |error |warning |note | -|:----------------|:-------|:------|:-------|:----| -|bayesdfa |1.3.2 |1 | | | -|ctsem |3.9.1 |1 | | | -|geostan |0.5.3 |1 | | | -|[ggtern](failures.md#ggtern)|3.4.2 |__+1__ | |1 -1 | -|grandR |? | | | | -|rmsb |1.0-0 |1 | | | -|rstanarm |2.32.1 |1 | | | -|Seurat |? | | | | -|streamDAG |? | | | | -|treestats |1.0.5 |1 | | | -|TriDimRegression |1.0.2 |1 | | | -|triptych |0.1.2 |1 | | | -|valse |0.1-0 |1 | | | +|package |version |error |warning |note | +|:----------------|:-------|:-----|:-------|:----| +|bayesdfa |1.3.3 |1 | | | +|bmgarch |2.0.0 |1 | | | +|ctsem |3.9.1 |1 | | | +|EcoEnsemble |1.0.5 |1 | | | +|geostan |0.5.4 |1 | | | +|grandR |? | | | | +|multilevelcoda |1.2.3 |1 | | | +|multinma |0.6.1 |1 | | | +|rmsb |1.1-0 |1 | | | +|rstanarm |2.32.1 |1 | | | +|Seurat |? | | | | +|streamDAG |? | | | | +|treestats |1.0.5 |1 | | | +|TriDimRegression |1.0.2 |1 | | | +|triptych |0.1.2 |1 | | | +|ubms |1.2.6 |1 | | | +|valse |0.1-0 |1 | | | -## New problems (56) +## New problems (5) -|package |version |error |warning |note | -|:------------------|:-------|:------|:-------|:------| -|[AcademicThemes](problems.md#academicthemes)|0.0.1 |__+1__ | | | -|[afex](problems.md#afex)|1.3-0 |__+2__ | | | -|[archeoViz](problems.md#archeoviz)|1.3.4 |__+1__ | | | -|[assignPOP](problems.md#assignpop)|1.2.4 |__+1__ | | | -|[bioassays](problems.md#bioassays)|1.0.1 |__+1__ | | | -|[BOSO](problems.md#boso)|1.0.3 |__+1__ | |1 | -|[breakDown](problems.md#breakdown)|0.2.1 |__+1__ | | | -|[canadianmaps](problems.md#canadianmaps)|1.3.0 |__+1__ | |2 | -|[CAST](problems.md#cast)|0.9.0 | | |__+1__ | -|[CEDA](problems.md#ceda)|1.1.0 |__+1__ | | | -|[cobalt](problems.md#cobalt)|4.5.3 |__+2__ | | | -|[constructive](problems.md#constructive)|0.2.0 |__+1__ | | | -|[docxtools](problems.md#docxtools)|0.3.0 |__+1__ | | | -|[dynamAedes](problems.md#dynamaedes)|2.2.8 |__+1__ | | | -|[EcoDiet](problems.md#ecodiet)|2.0.0 |__+1__ | | | -|[epos](problems.md#epos)|1.0 |__+1__ | |2 | -|[feasts](problems.md#feasts)|0.3.1 |__+3__ | | | -|[fitODBODRshiny](problems.md#fitodbodrshiny)|1.0.0 |__+1__ | |1 | -|[fmeffects](problems.md#fmeffects)|0.1.1 |__+2__ | | | -|[genekitr](problems.md#genekitr)|1.2.5 |__+1__ | | | -|[geomtextpath](problems.md#geomtextpath)|0.1.1 |__+1__ | | | -|[ggedit](problems.md#ggedit)|0.3.1 |__+1__ | |1 | -|[gghdr](problems.md#gghdr)|0.2.0 |__+3__ | | | -|[ggiraph](problems.md#ggiraph)|0.8.8 |__+2__ | |1 | -|[ggiraphExtra](problems.md#ggiraphextra)|0.3.0 |__+1__ | | | -|[ggparallel](problems.md#ggparallel)|0.3.0 |__+1__ | | | -|[ggprism](problems.md#ggprism)|1.0.4 |__+3__ | | | -|[ggraph](problems.md#ggraph)|2.1.0 |__+2__ | |2 | -|[ggside](problems.md#ggside)|0.2.3 |__+3__ | | | -|[ggstance](problems.md#ggstance)|0.3.6 |__+1__ | | | -|[ggstatsplot](problems.md#ggstatsplot)|0.12.2 |__+2__ | | | -|[ghibli](problems.md#ghibli)|0.3.3 |__+1__ | | | -|[glancedata](problems.md#glancedata)|1.0.1 |__+1__ | |1 | -|[grafify](problems.md#grafify)|4.0 |__+1__ | |2 | -|[inTextSummaryTable](problems.md#intextsummarytable)|3.3.1 |__+1__ | |1 | -|[LMoFit](problems.md#lmofit)|0.1.6 |__+1__ | | | -|[manydata](problems.md#manydata)|0.8.3 |__+1__ | |1 | -|[MiscMetabar](problems.md#miscmetabar)|0.7.9 |__+2__ | | | -|[miWQS](problems.md#miwqs)|0.4.4 |__+1__ |-1 | | -|[NAIR](problems.md#nair)|1.0.3 |__+1__ | |1 | -|[OpenLand](problems.md#openland)|1.0.2 |__+1__ | | | -|[platetools](problems.md#platetools)|0.1.5 |__+1__ | | | -|[plot3logit](problems.md#plot3logit)|3.1.4 |__+1__ | | | -|[PTXQC](problems.md#ptxqc)|1.1.0 |__+2__ | |1 | -|[rabhit](problems.md#rabhit)|0.2.5 |__+1__ |-1 | | -|[santaR](problems.md#santar)|1.2.3 |__+1__ | |1 | -|[saros](problems.md#saros)|1.0.1 |__+2__ | | | -|[scCustomize](problems.md#sccustomize)|2.0.1 |__+1__ | | | -|[scdhlm](problems.md#scdhlm)|0.7.2 |__+1__ | | | -|[see](problems.md#see)|0.8.2 |__+1__ | | | -|[spqdep](problems.md#spqdep)|0.1.3.2 |__+1__ | |2 | -|[TCIU](problems.md#tciu)|1.2.4 |__+1__ | |1 | -|[tmt](problems.md#tmt)|0.3.1-2 |__+1__ | | | -|[tvthemes](problems.md#tvthemes)|1.3.2 |__+1__ | | | -|[ufs](problems.md#ufs)|0.5.10 |__+1__ | | | -|[visR](problems.md#visr)|0.4.0 |__+2__ | | | +|package |version |error |warning |note | +|:----------------------|:-------|:------|:-------|:------| +|[ggh4x](problems.md#ggh4x)|0.2.8 |__+3__ | | | +|[MplusAutomation](problems.md#mplusautomation)|1.1.1 | | |__+1__ | +|[PlasmaMutationDetector](problems.md#plasmamutationdetector)|1.7.2 | | |__+1__ | +|[Superpower](problems.md#superpower)|0.2.0 |__+1__ | |1 | +|[xaringanthemer](problems.md#xaringanthemer)|0.4.2 |__+1__ | | | diff --git a/revdep/cran.md b/revdep/cran.md index 25098e5f12..ff60632977 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,208 +1,42 @@ ## revdepcheck results -We checked 4935 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. +We checked 5021 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. - * We saw 56 new problems - * We failed to check 13 packages + * We saw 5 new problems + * We failed to check 17 packages Issues with CRAN packages are summarised below. ### New problems (This reports the first line of each new failure) -* AcademicThemes - checking tests ... ERROR - -* afex - checking tests ... ERROR - checking re-building of vignette outputs ... ERROR - -* archeoViz - checking tests ... ERROR - -* assignPOP - checking tests ... ERROR - -* bioassays - checking tests ... ERROR - -* BOSO - checking re-building of vignette outputs ... ERROR - -* breakDown - checking tests ... ERROR - -* canadianmaps - checking tests ... ERROR - -* CAST - checking installed package size ... NOTE - -* CEDA - checking re-building of vignette outputs ... ERROR - -* cobalt - checking examples ... ERROR - checking re-building of vignette outputs ... ERROR - -* constructive - checking tests ... ERROR - -* docxtools - checking tests ... ERROR - -* dynamAedes - checking re-building of vignette outputs ... ERROR - -* EcoDiet - checking re-building of vignette outputs ... ERROR - -* epos - checking tests ... ERROR - -* feasts - checking examples ... ERROR - checking tests ... ERROR - checking re-building of vignette outputs ... ERROR - -* fitODBODRshiny - checking examples ... ERROR - -* fmeffects - checking examples ... ERROR - checking re-building of vignette outputs ... ERROR - -* genekitr - checking examples ... ERROR - -* geomtextpath - checking tests ... ERROR - -* ggedit - checking examples ... ERROR - -* gghdr - checking examples ... ERROR - checking tests ... ERROR - checking re-building of vignette outputs ... ERROR - -* ggiraph - checking examples ... ERROR - checking tests ... ERROR - -* ggiraphExtra - checking examples ... ERROR - -* ggparallel - checking tests ... ERROR - -* ggprism - checking examples ... ERROR - checking tests ... ERROR - checking re-building of vignette outputs ... ERROR - -* ggraph - checking examples ... ERROR - checking re-building of vignette outputs ... ERROR - -* ggside +* ggh4x checking examples ... ERROR checking tests ... ERROR checking re-building of vignette outputs ... ERROR -* ggstance - checking tests ... ERROR - -* ggstatsplot - checking examples ... ERROR - checking tests ... ERROR - -* ghibli - checking tests ... ERROR - -* glancedata - checking tests ... ERROR - -* grafify - checking tests ... ERROR - -* inTextSummaryTable - checking tests ... ERROR - -* LMoFit - checking re-building of vignette outputs ... ERROR - -* manydata - checking tests ... ERROR - -* MiscMetabar - checking examples ... ERROR - checking re-building of vignette outputs ... ERROR - -* miWQS - checking re-building of vignette outputs ... ERROR - -* NAIR - checking tests ... ERROR - -* OpenLand - checking tests ... ERROR - -* platetools - checking tests ... ERROR - -* plot3logit - checking re-building of vignette outputs ... ERROR - -* PTXQC - checking examples ... ERROR - checking tests ... ERROR - -* rabhit - checking re-building of vignette outputs ... ERROR - -* santaR - checking tests ... ERROR - -* saros - checking examples ... ERROR - checking tests ... ERROR - -* scCustomize - checking examples ... ERROR - -* scdhlm - checking tests ... ERROR - -* see - checking examples ... ERROR - -* spqdep - checking re-building of vignette outputs ... ERROR - -* TCIU - checking re-building of vignette outputs ... ERROR +* MplusAutomation + checking installed package size ... NOTE -* tmt - checking tests ... ERROR +* PlasmaMutationDetector + checking installed package size ... NOTE -* tvthemes +* Superpower checking tests ... ERROR -* ufs - checking examples ... ERROR - -* visR - checking examples ... ERROR +* xaringanthemer checking tests ... ERROR ### Failed to check * bayesdfa (NA) +* bmgarch (NA) * ctsem (NA) +* EcoEnsemble (NA) * geostan (NA) -* ggtern (NA) * grandR (NA) +* multilevelcoda (NA) +* multinma (NA) * rmsb (NA) * rstanarm (NA) * Seurat (NA) @@ -210,4 +44,5 @@ Issues with CRAN packages are summarised below. * treestats (NA) * TriDimRegression (NA) * triptych (NA) +* ubms (NA) * valse (NA) diff --git a/revdep/failures.md b/revdep/failures.md index fe7d82c244..ca00cbc9ae 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -2,11 +2,11 @@
-* Version: 1.3.2 +* Version: 1.3.3 * GitHub: https://github.com/fate-ewi/bayesdfa * Source code: https://github.com/cran/bayesdfa -* Date/Publication: 2024-01-12 15:50:02 UTC -* Number of recursive dependencies: 85 +* Date/Publication: 2024-02-26 20:50:06 UTC +* Number of recursive dependencies: 89 Run `revdepcheck::cloud_details(, "bayesdfa")` for more info @@ -34,13 +34,13 @@ using C++17 g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397, +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, ... -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ /opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++: fatal error: Killed signal terminated program cc1plus compilation terminated. make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1 @@ -61,13 +61,13 @@ using C++17 g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397, +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, ... -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ /opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++: fatal error: Killed signal terminated program cc1plus compilation terminated. make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1 @@ -75,6 +75,84 @@ ERROR: compilation failed for package ‘bayesdfa’ * removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’ +``` +# bmgarch + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/ph-rast/bmgarch +* Source code: https://github.com/cran/bmgarch +* Date/Publication: 2023-09-12 00:40:02 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "bmgarch")` for more info + +
+ +## In both + +* checking whether package ‘bmgarch’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bmgarch’ ... +** package ‘bmgarch’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_DCCMGARCH_namespace::model_DCCMGARCH; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_DCCMGARCH.o] Error 1 +ERROR: compilation failed for package ‘bmgarch’ +* removing ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/bmgarch’ + + +``` +### CRAN + +``` +* installing *source* package ‘bmgarch’ ... +** package ‘bmgarch’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_DCCMGARCH_namespace::model_DCCMGARCH; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_DCCMGARCH.o] Error 1 +ERROR: compilation failed for package ‘bmgarch’ +* removing ‘/tmp/workdir/bmgarch/old/bmgarch.Rcheck/bmgarch’ + + ``` # ctsem @@ -84,7 +162,7 @@ ERROR: compilation failed for package ‘bayesdfa’ * GitHub: https://github.com/cdriveraus/ctsem * Source code: https://github.com/cran/ctsem * Date/Publication: 2023-10-30 14:20:02 UTC -* Number of recursive dependencies: 138 +* Number of recursive dependencies: 143 Run `revdepcheck::cloud_details(, "ctsem")` for more info @@ -112,13 +190,13 @@ using C++17 g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397, +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, ... -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ /opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++: fatal error: Killed signal terminated program cc1plus compilation terminated. make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 @@ -139,13 +217,13 @@ using C++17 g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397, +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, ... -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ /opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++: fatal error: Killed signal terminated program cc1plus compilation terminated. make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 @@ -154,26 +232,26 @@ ERROR: compilation failed for package ‘ctsem’ ``` -# geostan +# EcoEnsemble
-* Version: 0.5.3 -* GitHub: https://github.com/ConnorDonegan/geostan -* Source code: https://github.com/cran/geostan -* Date/Publication: 2023-11-24 22:30:02 UTC -* Number of recursive dependencies: 109 +* Version: 1.0.5 +* GitHub: NA +* Source code: https://github.com/cran/EcoEnsemble +* Date/Publication: 2023-09-18 11:50:02 UTC +* Number of recursive dependencies: 91 -Run `revdepcheck::cloud_details(, "geostan")` for more info +Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info
## In both -* checking whether package ‘geostan’ can be installed ... ERROR +* checking whether package ‘EcoEnsemble’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/geostan/new/geostan.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details. ``` ## Installation @@ -181,91 +259,77 @@ Run `revdepcheck::cloud_details(, "geostan")` for more info ### Devel ``` -* installing *source* package ‘geostan’ ... -** package ‘geostan’ successfully unpacked and MD5 sums checked +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397, +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, ... -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_foundation_namespace::model_foundation; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_namespace::model_ensemble_model; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++: fatal error: Killed signal terminated program cc1plus compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_foundation.o] Error 1 -ERROR: compilation failed for package ‘geostan’ -* removing ‘/tmp/workdir/geostan/new/geostan.Rcheck/geostan’ +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’ ``` ### CRAN ``` -* installing *source* package ‘geostan’ ... -** package ‘geostan’ successfully unpacked and MD5 sums checked +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397, +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, ... -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_foundation_namespace::model_foundation; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_namespace::model_ensemble_model; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++: fatal error: Killed signal terminated program cc1plus compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_foundation.o] Error 1 -ERROR: compilation failed for package ‘geostan’ -* removing ‘/tmp/workdir/geostan/old/geostan.Rcheck/geostan’ +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’ ``` -# ggtern +# geostan
-* Version: 3.4.2 -* GitHub: NA -* Source code: https://github.com/cran/ggtern -* Date/Publication: 2023-06-06 11:10:02 UTC -* Number of recursive dependencies: 42 +* Version: 0.5.4 +* GitHub: https://github.com/ConnorDonegan/geostan +* Source code: https://github.com/cran/geostan +* Date/Publication: 2024-03-03 15:22:39 UTC +* Number of recursive dependencies: 108 -Run `revdepcheck::cloud_details(, "ggtern")` for more info +Run `revdepcheck::cloud_details(, "geostan")` for more info
-## Newly broken - -* checking whether package ‘ggtern’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘chemometrics’ - ``` - ## In both -* checking package dependencies ... NOTE +* checking whether package ‘geostan’ can be installed ... ERROR ``` - Package which this enhances but not available for checking: ‘sp’ + Installation failed. + See ‘/tmp/workdir/geostan/new/geostan.Rcheck/00install.out’ for details. ``` ## Installation @@ -273,41 +337,54 @@ Run `revdepcheck::cloud_details(, "ggtern")` for more info ### Devel ``` -* installing *source* package ‘ggtern’ ... -** package ‘ggtern’ successfully unpacked and MD5 sums checked +* installing *source* package ‘geostan’ ... +** package ‘geostan’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -** demo -** inst -** byte-compile and prepare package for lazy loading -Error in get(x, envir = ns, inherits = FALSE) : - object 'build_guides' not found -Error: unable to load R code in package ‘ggtern’ -Execution halted -ERROR: lazy loading failed for package ‘ggtern’ -* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’ +** libs +using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_foundation_namespace::model_foundation; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_foundation.o] Error 1 +ERROR: compilation failed for package ‘geostan’ +* removing ‘/tmp/workdir/geostan/new/geostan.Rcheck/geostan’ ``` ### CRAN ``` -* installing *source* package ‘ggtern’ ... -** package ‘ggtern’ successfully unpacked and MD5 sums checked +* installing *source* package ‘geostan’ ... +** package ‘geostan’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -** demo -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (ggtern) +** libs +using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_foundation_namespace::model_foundation; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_foundation.o] Error 1 +ERROR: compilation failed for package ‘geostan’ +* removing ‘/tmp/workdir/geostan/old/geostan.Rcheck/geostan’ ``` @@ -319,7 +396,7 @@ ERROR: lazy loading failed for package ‘ggtern’ * GitHub: https://github.com/erhard-lab/grandR * Source code: https://github.com/cran/grandR * Date/Publication: 2024-02-15 15:30:02 UTC -* Number of recursive dependencies: 267 +* Number of recursive dependencies: 266 Run `revdepcheck::cloud_details(, "grandR")` for more info @@ -386,15 +463,153 @@ Status: 2 NOTEs +``` +# multilevelcoda + +
+ +* Version: 1.2.3 +* GitHub: https://github.com/florale/multilevelcoda +* Source code: https://github.com/cran/multilevelcoda +* Date/Publication: 2024-03-10 23:00:03 UTC +* Number of recursive dependencies: 159 + +Run `revdepcheck::cloud_details(, "multilevelcoda")` for more info + +
+ +## In both + +* checking whether package ‘multilevelcoda’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/multilevelcoda/new/multilevelcoda.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘multilevelcoda’ ... +** package ‘multilevelcoda’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: object ‘launch_shinystan’ is not exported by 'namespace:brms' +Execution halted +ERROR: lazy loading failed for package ‘multilevelcoda’ +* removing ‘/tmp/workdir/multilevelcoda/new/multilevelcoda.Rcheck/multilevelcoda’ + + +``` +### CRAN + +``` +* installing *source* package ‘multilevelcoda’ ... +** package ‘multilevelcoda’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: object ‘launch_shinystan’ is not exported by 'namespace:brms' +Execution halted +ERROR: lazy loading failed for package ‘multilevelcoda’ +* removing ‘/tmp/workdir/multilevelcoda/old/multilevelcoda.Rcheck/multilevelcoda’ + + +``` +# multinma + +
+ +* Version: 0.6.1 +* GitHub: https://github.com/dmphillippo/multinma +* Source code: https://github.com/cran/multinma +* Date/Publication: 2024-03-06 01:00:05 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "multinma")` for more info + +
+ +## In both + +* checking whether package ‘multinma’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +In file included from stanExports_survival_mspline.cc:5: +stanExports_survival_mspline.h: In constructor ‘model_survival_mspline_namespace::model_survival_mspline::model_survival_mspline(stan::io::var_context&, unsigned int, std::ostream*)’: +stanExports_survival_mspline.h:2252:3: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without + 2252 | model_survival_mspline(stan::io::var_context& context__, unsigned int + | ^~~~~~~~~~~~~~~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_mspline.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’ + + +``` +### CRAN + +``` +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +In file included from stanExports_survival_mspline.cc:5: +stanExports_survival_mspline.h: In constructor ‘model_survival_mspline_namespace::model_survival_mspline::model_survival_mspline(stan::io::var_context&, unsigned int, std::ostream*)’: +stanExports_survival_mspline.h:2252:3: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without + 2252 | model_survival_mspline(stan::io::var_context& context__, unsigned int + | ^~~~~~~~~~~~~~~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_mspline.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’ + + ``` # rmsb
-* Version: 1.0-0 +* Version: 1.1-0 * GitHub: NA * Source code: https://github.com/cran/rmsb -* Date/Publication: 2023-09-26 13:10:02 UTC +* Date/Publication: 2024-03-12 15:50:02 UTC * Number of recursive dependencies: 144 Run `revdepcheck::cloud_details(, "rmsb")` for more info @@ -447,7 +662,7 @@ ERROR: configuration failed for package ‘rmsb’ * GitHub: https://github.com/stan-dev/rstanarm * Source code: https://github.com/cran/rstanarm * Date/Publication: 2024-01-18 23:00:03 UTC -* Number of recursive dependencies: 139 +* Number of recursive dependencies: 138 Run `revdepcheck::cloud_details(, "rstanarm")` for more info @@ -477,10 +692,10 @@ Wrote C++ file "stan_files/lm.cc" ... -stan_files/mvmer.hpp: In constructor ‘model_mvmer_namespace::model_mvmer::model_mvmer(stan::io::var_context&, unsigned int, std::ostream*)’: -stan_files/mvmer.hpp:5240:3: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without - 5240 | model_mvmer(stan::io::var_context& context__, unsigned int - | ^~~~~~~~~~~ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++: fatal error: Killed signal terminated program cc1plus compilation terminated. make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/mvmer.o] Error 1 @@ -504,10 +719,10 @@ Wrote C++ file "stan_files/lm.cc" ... -stan_files/mvmer.hpp: In constructor ‘model_mvmer_namespace::model_mvmer::model_mvmer(stan::io::var_context&, unsigned int, std::ostream*)’: -stan_files/mvmer.hpp:5240:3: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without - 5240 | model_mvmer(stan::io::var_context& context__, unsigned int - | ^~~~~~~~~~~ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++: fatal error: Killed signal terminated program cc1plus compilation terminated. make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/mvmer.o] Error 1 @@ -521,10 +736,10 @@ ERROR: compilation failed for package ‘rstanarm’
-* Version: 5.0.1 +* Version: 5.0.3 * GitHub: https://github.com/satijalab/seurat * Source code: https://github.com/cran/Seurat -* Date/Publication: 2023-11-17 23:10:06 UTC +* Date/Publication: 2024-03-18 23:40:02 UTC * Number of recursive dependencies: 264 Run `revdepcheck::cloud_details(, "Seurat")` for more info @@ -673,7 +888,7 @@ Status: 1 ERROR * GitHub: https://github.com/thijsjanzen/treestats * Source code: https://github.com/cran/treestats * Date/Publication: 2024-01-30 15:50:02 UTC -* Number of recursive dependencies: 229 +* Number of recursive dependencies: 232 Run `revdepcheck::cloud_details(, "treestats")` for more info @@ -721,7 +936,7 @@ Error: C++20 standard requested but CXX20 is not defined * GitHub: https://github.com/alexander-pastukhov/tridim-regression * Source code: https://github.com/cran/TriDimRegression * Date/Publication: 2023-09-13 14:10:03 UTC -* Number of recursive dependencies: 100 +* Number of recursive dependencies: 99 Run `revdepcheck::cloud_details(, "TriDimRegression")` for more info @@ -812,6 +1027,84 @@ Error: C++20 standard requested but CXX20 is not defined * removing ‘/tmp/workdir/triptych/old/triptych.Rcheck/triptych’ +``` +# ubms + +
+ +* Version: 1.2.6 +* GitHub: https://github.com/kenkellner/ubms +* Source code: https://github.com/cran/ubms +* Date/Publication: 2023-09-11 18:50:02 UTC +* Number of recursive dependencies: 145 + +Run `revdepcheck::cloud_details(, "ubms")` for more info + +
+ +## In both + +* checking whether package ‘ubms’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ubms/new/ubms.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ubms’ ... +** package ‘ubms’ successfully unpacked and MD5 sums checked +** using staged installation +Registered S3 methods overwritten by 'RcppEigen': + method from + predict.fastLm RcppArmadillo + print.fastLm RcppArmadillo + summary.fastLm RcppArmadillo + print.summary.fastLm RcppArmadillo +Warning message: +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_colext_namespace::model_colext; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_colext.o] Error 1 +ERROR: compilation failed for package ‘ubms’ +* removing ‘/tmp/workdir/ubms/new/ubms.Rcheck/ubms’ + + +``` +### CRAN + +``` +* installing *source* package ‘ubms’ ... +** package ‘ubms’ successfully unpacked and MD5 sums checked +** using staged installation +Registered S3 methods overwritten by 'RcppEigen': + method from + predict.fastLm RcppArmadillo + print.fastLm RcppArmadillo + summary.fastLm RcppArmadillo + print.summary.fastLm RcppArmadillo +Warning message: +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_colext_namespace::model_colext; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_colext.o] Error 1 +ERROR: compilation failed for package ‘ubms’ +* removing ‘/tmp/workdir/ubms/old/ubms.Rcheck/ubms’ + + ``` # valse diff --git a/revdep/problems.md b/revdep/problems.md index af2178c0fb..8151dae476 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,2552 +1,14 @@ -# AcademicThemes +# ggh4x
-* Version: 0.0.1 -* GitHub: https://github.com/hwarden162/AcademicThemes -* Source code: https://github.com/cran/AcademicThemes -* Date/Publication: 2023-03-27 12:40:02 UTC -* Number of recursive dependencies: 119 - -Run `revdepcheck::cloud_details(, "AcademicThemes")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/tests.html - > # * https://testthat.r-lib.org/reference/test_package.html#special-files - ... - `environment(actual$super)$env$call`: `scale_fill_academic_d(palette_name)` - `environment(expected$super)$env$call`: `eval(code, test_env)` - - environment(actual$super)$members$call vs environment(expected$super)$members$call - - `scale_fill_academic_d(palette_name)` - + `eval(code, test_env)` - - [ FAIL 124 | WARN 124 | SKIP 0 | PASS 133 ] - Error: Test failures - Execution halted - ``` - -# afex - -
- -* Version: 1.3-0 -* GitHub: https://github.com/singmann/afex -* Source code: https://github.com/cran/afex -* Date/Publication: 2023-04-17 22:00:02 UTC -* Number of recursive dependencies: 226 - -Run `revdepcheck::cloud_details(, "afex")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(afex) - Loading required package: lme4 - Loading required package: Matrix - ************ - Welcome to afex. For support visit: http://afex.singmann.science/ - - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4() - ... - • afex_plot-default-support/afex-plots-nlme-3.svg - • afex_plot-default-support/afex-plots-nlme-4.svg - • afex_plot-default-support/afex-plots-nlme-5.svg - • afex_plot-default-support/afex-plots-poisson-glm-1.svg - • afex_plot-default-support/afex-plots-poisson-glm-2.svg - • afex_plot-vignette/afex-plot-glmmtmb-1.svg - • afex_plot-vignette/afex-plot-glmmtmb-2.svg - • afex_plot-vignette/afex-plot-glmmtmb-3.svg - Error: Test failures - Execution halted - ``` - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - --- re-building ‘afex_analysing_accuracy_data.Rmd’ using rmarkdown - --- finished re-building ‘afex_analysing_accuracy_data.Rmd’ - - --- re-building ‘afex_anova_example.Rmd’ using rmarkdown - --- finished re-building ‘afex_anova_example.Rmd’ - - --- re-building ‘afex_mixed_example.Rmd’ using rmarkdown - --- finished re-building ‘afex_mixed_example.Rmd’ - - ... - --- finished re-building ‘assumptions_of_ANOVAs.Rmd’ - - --- re-building ‘introduction-mixed-models.pdf.asis’ using asis - --- finished re-building ‘introduction-mixed-models.pdf.asis’ - - SUMMARY: processing the following file failed: - ‘afex_plot_supported_models.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# archeoViz - -
- -* Version: 1.3.4 -* GitHub: https://github.com/sebastien-plutniak/archeoviz -* Source code: https://github.com/cran/archeoViz -* Date/Publication: 2024-01-31 18:00:13 UTC -* Number of recursive dependencies: 120 - -Run `revdepcheck::cloud_details(, "archeoViz")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(archeoViz) - > - > test_check("archeoViz") - 10 X squares, but 9 labels provided: 1, 2, 3, 4, 5, 6, 7, 8, 9. - - 100 X squares, but 10 labels provided: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10. - ... - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 82 ] - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test.do_section_plot.R:105:3'): .do_section_plot: Altitude values ── - fig.y$x$layoutAttrs[[1]]$yaxis$range[2] is not strictly less than 200. Difference: 3 - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 82 ] - Error: Test failures - Execution halted - ``` - -# assignPOP - -
- -* Version: 1.2.4 -* GitHub: https://github.com/alexkychen/assignPOP -* Source code: https://github.com/cran/assignPOP -* Date/Publication: 2021-10-27 19:30:02 UTC -* Number of recursive dependencies: 142 - -Run `revdepcheck::cloud_details(, "assignPOP")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(assignPOP) - > - > test_check("assignPOP") - - Correct assignment rates were estimated!! - A total of 3 assignment tests for 3 pops. - ... - Actual value: "List of 11\\n \$ data :'data\.frame':\\t72 obs\. of 6 variables:\\n \.\.\$ Ind\.ID : Factor w/ 24 levels "A10","A12","AA9",\.\.: 3 1 2 5 6 4 7 8 11 9 \.\.\.\\n \.\.\$ origin\.pop: Factor w/ 3 levels "pop\.1","pop\.2",\.\.: 1 1 1 2 2 2 3 3 1 1 \.\.\.\\n \.\.\$ pred\.pop : Factor w/ 3 levels "pop\.1","pop\.3",\.\.: 1 2 2 1 1 1 1 1 2 2 \.\.\.\\n \.\.\$ fold_n : chr \[1:72\] "fold_1" "fold_1" "fold_1" "fold_1" \.\.\.\\n \.\.\$ variable : Factor w/ 3 levels "pop\.1","pop\.2",\.\.: 1 1 1 1 1 1 1 1 1 1 \.\.\.\\n \.\.\$ value : num \[1:72\] 0\.4 0\.326 0\.26 0\.383 0\.44 \.\.\.\\n \$ layers :List of 1\\n \.\.\$ :Classes 'LayerInstance', 'Layer', 'ggproto', 'gg' \\n aes_params: list\\n compute_aesthetics: 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function\\n type: NULL\\n vjust: 1\\n super: \\n print: function\\n setup_layer: function\\n show\.legend: NA\\n stat: \\n aesthetics: function\\n compute_group: function\\n compute_layer: function\\n compute_panel: function\\n default_aes: uneval\\n dropped_aes: \\n extra_params: na\.rm\\n finish_layer: function\\n non_missing_aes: \\n optional_aes: \\n parameters: function\\n required_aes: \\n retransform: TRUE\\n setup_data: function\\n setup_params: function\\n super: \\n stat_params: list\\n super: \\n \$ scales :Classes 'ScalesList', 'ggproto', 'gg' \\n add: function\\n add_defaults: function\\n add_missing: function\\n backtransform_df: function\\n clone: function\\n find: function\\n get_scales: function\\n has_scale: function\\n input: function\\n map_df: function\\n n: function\\n non_position_scales: function\\n scales: list\\n train_df: function\\n transform_df: function\\n super: \\n \$ guides :Classes 'Guides', 'ggproto', 'gg' \\n add: function\\n assemble: function\\n build: function\\n draw: function\\n get_custom: function\\n get_guide: function\\n get_params: function\\n get_position: function\\n guides: list\\n merge: function\\n missing: \\n add_title: function\\n arrange_layout: function\\n assemble_drawing: function\\n available_aes: any\\n build_decor: function\\n build_labels: function\\n build_ticks: function\\n build_title: function\\n draw: function\\n draw_early_exit: function\\n elements: list\\n extract_decor: function\\n extract_key: function\\n extract_params: function\\n get_layer_key: function\\n hashables: list\\n measure_grobs: function\\n merge: function\\n override_elements: function\\n params: list\\n process_layers: function\\n setup_elements: function\\n setup_params: function\\n train: function\\n transform: function\\n super: \\n package_box: function\\n print: function\\n process_layers: function\\n setup: function\\n subset_guides: function\\n train: function\\n update_params: function\\n super: \\n \$ mapping :List of 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axis\.ticks\.x\.bottom : NULL\\n \.\.\$ axis\.ticks\.y : NULL\\n \.\.\$ axis\.ticks\.y\.left : NULL\\n \.\.\$ axis\.ticks\.y\.right : NULL\\n \.\.\$ axis\.ticks\.theta : NULL\\n \.\.\$ axis\.ticks\.r : NULL\\n \.\.\$ axis\.minor\.ticks\.x\.top : NULL\\n \.\.\$ axis\.minor\.ticks\.x\.bottom : NULL\\n \.\.\$ axis\.minor\.ticks\.y\.left : NULL\\n \.\.\$ axis\.minor\.ticks\.y\.right : NULL\\n \.\.\$ axis\.minor\.ticks\.theta : NULL\\n \.\.\$ axis\.minor\.ticks\.r : NULL\\n \.\.\$ axis\.ticks\.length : 'simpleUnit' num 2\.75points\\n \.\. \.\.- attr\(\*, "unit"\)= int 8\\n \.\.\$ axis\.ticks\.length\.x : NULL\\n \.\.\$ axis\.ticks\.length\.x\.top : NULL\\n \.\.\$ axis\.ticks\.length\.x\.bottom : NULL\\n \.\.\$ axis\.ticks\.length\.y : NULL\\n \.\.\$ axis\.ticks\.length\.y\.left : NULL\\n \.\.\$ axis\.ticks\.length\.y\.right : NULL\\n \.\.\$ axis\.ticks\.length\.theta : NULL\\n \.\.\$ axis\.ticks\.length\.r : NULL\\n \.\.\$ axis\.minor\.ticks\.length : 'rel' num 0\.75\\n \.\.\$ axis\.minor\.ticks\.length\.x : NULL\\n \.\.\$ axis\.minor\.ticks\.length\.x\.top : NULL\\n \.\.\$ axis\.minor\.ticks\.length\.x\.bottom: NULL\\n \.\.\$ axis\.minor\.ticks\.length\.y : NULL\\n \.\.\$ axis\.minor\.ticks\.length\.y\.left : NULL\\n \.\.\$ axis\.minor\.ticks\.length\.y\.right : NULL\\n \.\.\$ axis\.minor\.ticks\.length\.theta : NULL\\n \.\.\$ axis\.minor\.ticks\.length\.r : NULL\\n \.\.\$ axis\.line : list\(\)\\n \.\. \.\.- attr\(\*, "class"\)= chr \[1:2\] "element_blank" "element"\\n \.\.\$ axis\.line\.x : NULL\\n \.\.\$ axis\.line\.x\.top : NULL\\n \.\.\$ axis\.line\.x\.bottom : NULL\\n \.\.\$ axis\.line\.y : NULL\\n \.\.\$ axis\.line\.y\.left : NULL\\n \.\.\$ axis\.line\.y\.right : NULL\\n \.\.\$ axis\.line\.theta : NULL\\n \.\.\$ axis\.line\.r : NULL\\n \.\.\$ legend\.background :List of 5\\n \.\. \.\.\$ fill : NULL\\n \.\. \.\.\$ colour : logi NA\\n \.\. \.\.\$ linewidth : NULL\\n \.\. \.\.\$ linetype : NULL\\n \.\. \.\.\$ inherit\.blank: logi TRUE\\n \.\. \.\.- attr\(\*, "class"\)= chr \[1:2\] "element_rect" "element"\\n \.\.\$ legend\.margin : 'margin' num \[1:4\] 5\.5points 5\.5points 5\.5points 5\.5points\\n \.\. \.\.- attr\(\*, "unit"\)= int 8\\n \.\.\$ legend\.spacing : 'simpleUnit' num 11points\\n \.\. \.\.- attr\(\*, "unit"\)= int 8\\n \.\.\$ legend\.spacing\.x : NULL\\n \.\.\$ legend\.spacing\.y : NULL\\n \.\.\$ legend\.key : NULL\\n \.\.\$ legend\.key\.size : 'simpleUnit' num 1\.2lines\\n \.\. \.\.- attr\(\*, "unit"\)= int 3\\n \.\.\$ legend\.key\.height : NULL\\n \.\.\$ legend\.key\.width : NULL\\n \.\.\$ legend\.key\.spacing : 'simpleUnit' num 5\.5points\\n \.\. \.\.- attr\(\*, "unit"\)= int 8\\n \.\.\$ legend\.key\.spacing\.x : NULL\\n \.\.\$ legend\.key\.spacing\.y : NULL\\n \.\.\$ legend\.frame : NULL\\n \.\.\$ legend\.ticks : NULL\\n \.\.\$ legend\.ticks\.length : 'rel' num 0\.2\\n \.\.\$ legend\.axis\.line : NULL\\n \.\.\$ legend\.text :List of 11\\n \.\. \.\.\$ family : NULL\\n \.\. \.\.\$ face : NULL\\n \.\. \.\.\$ colour : NULL\\n \.\. \.\.\$ size : 'rel' num 0\.8\\n \.\. \.\.\$ hjust : NULL\\n \.\. \.\.\$ vjust : NULL\\n \.\. \.\.\$ angle : NULL\\n \.\. \.\.\$ lineheight : NULL\\n \.\. \.\.\$ margin : NULL\\n \.\. \.\.\$ debug : NULL\\n \.\. \.\.\$ inherit\.blank: logi TRUE\\n \.\. \.\.- attr\(\*, "class"\)= chr \[1:2\] "element_text" "element"\\n \.\.\$ legend\.text\.position : NULL\\n \.\.\$ legend\.title :List of 11\\n \.\. \.\.\$ family : NULL\\n \.\. \.\.\$ face : NULL\\n \.\. \.\.\$ colour : NULL\\n \.\. \.\.\$ size : NULL\\n \.\. \.\.\$ hjust : num 0\\n \.\. \.\.\$ vjust : NULL\\n \.\. \.\.\$ angle : NULL\\n \.\. \.\.\$ lineheight : NULL\\n \.\. \.\.\$ margin : NULL\\n \.\. \.\.\$ debug : NULL\\n \.\. \.\.\$ inherit\.blank: logi TRUE\\n \.\. \.\.- attr\(\*, "class"\)= chr \[1:2\] "element_text" "element"\\n \.\.\$ legend\.title\.position : NULL\\n \.\.\$ legend\.position : chr "right"\\n \.\.\$ legend\.position\.inside : NULL\\n \.\.\$ legend\.direction : NULL\\n \.\.\$ legend\.byrow : NULL\\n \.\.\$ legend\.justification : chr "center"\\n \.\.\$ legend\.justification\.top : NULL\\n \.\.\$ legend\.justification\.bottom : NULL\\n \.\.\$ legend\.justification\.left : NULL\\n \.\.\$ legend\.justification\.right : NULL\\n \.\.\$ legend\.justification\.inside : NULL\\n \.\.\$ legend\.location : NULL\\n \.\.\$ legend\.box : NULL\\n \.\.\$ legend\.box\.just : NULL\\n \.\.\$ legend\.box\.margin : 'margin' num \[1:4\] 0cm 0cm 0cm 0cm\\n \.\. \.\.- attr\(\*, "unit"\)= int 1\\n \.\.\$ legend\.box\.background : list\(\)\\n \.\. \.\.- attr\(\*, "class"\)= chr \[1:2\] "element_blank" "element"\\n \.\.\$ legend\.box\.spacing : 'simpleUnit' num 11points\\n \.\. \.\.- attr\(\*, "unit"\)= int 8\\n \.\. \[list output truncated\]\\n \.\.- attr\(\*, "class"\)= chr \[1:2\] "theme" "gg"\\n \.\.- attr\(\*, "complete"\)= logi TRUE\\n \.\.- attr\(\*, "validate"\)= logi TRUE\\n \$ coordinates:Classes 'CoordCartesian', 'Coord', 'ggproto', 'gg' \\n aspect: function\\n backtransform_range: function\\n clip: on\\n default: FALSE\\n distance: function\\n expand: TRUE\\n is_free: function\\n is_linear: function\\n labels: function\\n limits: list\\n modify_scales: function\\n range: function\\n render_axis_h: function\\n render_axis_v: function\\n render_bg: function\\n render_fg: function\\n setup_data: function\\n setup_layout: function\\n setup_panel_guides: function\\n setup_panel_params: function\\n setup_params: function\\n train_panel_guides: function\\n transform: function\\n super: \\n \$ facet :Classes 'FacetGrid', 'Facet', 'ggproto', 'gg' \\n compute_layout: function\\n draw_back: function\\n draw_front: function\\n draw_labels: function\\n draw_panels: function\\n finish_data: function\\n init_scales: function\\n map_data: function\\n params: list\\n setup_data: function\\n setup_params: function\\n shrink: TRUE\\n train_scales: function\\n vars: function\\n super: \\n \$ plot_env : \\n \$ layout :Classes 'Layout', 'ggproto', 'gg' \\n coord: NULL\\n coord_params: list\\n facet: NULL\\n facet_params: list\\n finish_data: function\\n get_scales: function\\n layout: NULL\\n map_position: function\\n panel_params: NULL\\n panel_scales_x: NULL\\n panel_scales_y: NULL\\n render: function\\n render_labels: function\\n reset_scales: function\\n resolve_label: function\\n setup: function\\n setup_panel_guides: function\\n setup_panel_params: function\\n train_position: function\\n super: \\n \$ labels :List of 4\\n \.\.\$ title: chr "K = 3 "\\n \.\.\$ y : chr "Probability"\\n \.\.\$ x : chr "Ind\.ID"\\n \.\.\$ fill : chr "variable"\\n - attr\(\*, "class"\)= chr \[1:2\] "gg" "ggplot"" - Backtrace: - ▆ - 1. └─testthat::expect_output(str(plot), "List of 10") at test_membership.R:5:3 - 2. └─testthat::expect_match(...) - 3. └─testthat:::expect_match_(...) - - [ FAIL 3 | WARN 1 | SKIP 0 | PASS 39 ] - Error: Test failures - Execution halted - ``` - -# bioassays - -
- -* Version: 1.0.1 -* GitHub: NA -* Source code: https://github.com/cran/bioassays -* Date/Publication: 2020-10-09 20:10:02 UTC -* Number of recursive dependencies: 73 - -Run `revdepcheck::cloud_details(, "bioassays")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(bioassays) - > - > test_check("bioassays") - F1 - F2 - F3 - ... - 1. ├─testthat::expect_identical(eg4$guides[[1]], NULL) at test_heatmap.R:43:3 - 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") - 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) - 4. ├─eg4$guides[[1]] - 5. └─ggplot2:::`[[.ggproto`(eg4$guides, 1) - 6. └─ggplot2:::fetch_ggproto(x, name) - - [ FAIL 4 | WARN 5 | SKIP 0 | PASS 48 ] - Error: Test failures - Execution halted - ``` - -# BOSO - -
- -* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/BOSO -* Date/Publication: 2021-07-01 07:40:11 UTC -* Number of recursive dependencies: 153 - -Run `revdepcheck::cloud_details(, "BOSO")` for more info - -
- -## Newly broken - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘BOSO.Rmd’ using rmarkdown - - Quitting from lines 475-492 [plot_comparison_BOSOvsREST] (BOSO.Rmd) - Error: processing vignette 'BOSO.Rmd' failed with diagnostics: - The `legend.pos` theme element is not defined in the element hierarchy. - --- failed re-building ‘BOSO.Rmd’ - - SUMMARY: processing the following file failed: - ‘BOSO.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -## In both - -* checking package dependencies ... NOTE - ``` - Packages suggested but not available for checking: 'cplexAPI', 'bestsubset' - ``` - -# breakDown - -
- -* Version: 0.2.1 -* GitHub: https://github.com/pbiecek/breakDown -* Source code: https://github.com/cran/breakDown -* Date/Publication: 2021-01-20 12:30:06 UTC -* Number of recursive dependencies: 119 - -Run `revdepcheck::cloud_details(, "breakDown")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(breakDown) - > - > test_check("breakDown") - contribution - (Intercept) 0.240 - - number_project = 2 -0.050 - ... - ── Failure ('test_plot.R:38:3'): Output format ───────────────────────────────── - plot(broken_rf_classif) has length 11, not length 9. - ── Failure ('test_plot.R:39:3'): Output format ───────────────────────────────── - plot(broken_lm_regr) has length 11, not length 9. - ── Failure ('test_plot.R:40:3'): Output format ───────────────────────────────── - plot(broken_glm_classif) has length 11, not length 9. - - [ FAIL 3 | WARN 12 | SKIP 0 | PASS 30 ] - Error: Test failures - Execution halted - ``` - -# canadianmaps - -
- -* Version: 1.3.0 -* GitHub: https://github.com/joellecayen/canadianmaps -* Source code: https://github.com/cran/canadianmaps -* Date/Publication: 2023-07-10 22:30:20 UTC -* Number of recursive dependencies: 82 - -Run `revdepcheck::cloud_details(, "canadianmaps")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(canadianmaps) - > - > test_check("canadianmaps") - [ FAIL 2 | WARN 0 | SKIP 0 | PASS 4 ] - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ... - `expected` is a character vector ('manual') - ── Failure ('test-functions.R:23:3'): check-functions: scale_color_map() returns a ggplot manual fill object ── - output$scale_name (`actual`) not equal to "manual" (`expected`). - - `actual` is NULL - `expected` is a character vector ('manual') - - [ FAIL 2 | WARN 0 | SKIP 0 | PASS 4 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘sf’ - All declared Imports should be used. - ``` - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 2992 marked UTF-8 strings - ``` - -# CAST - -
- -* Version: 0.9.0 -* GitHub: https://github.com/HannaMeyer/CAST -* Source code: https://github.com/cran/CAST -* Date/Publication: 2024-01-09 05:40:02 UTC -* Number of recursive dependencies: 159 - -Run `revdepcheck::cloud_details(, "CAST")` for more info - -
- -## Newly broken - -* checking installed package size ... NOTE - ``` - installed size is 5.0Mb - sub-directories of 1Mb or more: - doc 2.9Mb - extdata 1.6Mb - ``` - -# CEDA - -
- -* Version: 1.1.0 -* GitHub: NA -* Source code: https://github.com/cran/CEDA -* Date/Publication: 2022-08-11 13:50:12 UTC -* Number of recursive dependencies: 80 - -Run `revdepcheck::cloud_details(, "CEDA")` for more info - -
- -## Newly broken - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘Userguide.Rmd’ using rmarkdown - - Quitting from lines 190-191 [fig3] (Userguide.Rmd) - Error: processing vignette 'Userguide.Rmd' failed with diagnostics: - The `legend.text.align` theme element is not defined in the element - hierarchy. - --- failed re-building ‘Userguide.Rmd’ - - SUMMARY: processing the following file failed: - ‘Userguide.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# cobalt - -
- -* Version: 4.5.3 -* GitHub: https://github.com/ngreifer/cobalt -* Source code: https://github.com/cran/cobalt -* Date/Publication: 2024-01-10 03:23:07 UTC -* Number of recursive dependencies: 176 - -Run `revdepcheck::cloud_details(, "cobalt")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘cobalt-Ex.R’ failed - The error most likely occurred in: - - > ### Name: balance-statistics - > ### Title: Balance Statistics in 'bal.tab' and 'love.plot' - > ### Aliases: balance-statistics - > - > ### ** Examples - > - > data(lalonde) - ... - Warning: No shared levels found between `names(values)` of the manual scale and the - data's fill values. - Warning: No shared levels found between `names(values)` of the manual scale and the - data's fill values. - Warning: No shared levels found between `names(values)` of the manual scale and the - data's fill values. - Error in legg$grobs[[which(legg$layout$name == "guide-box")]] : - attempt to select less than one element in get1index - Calls: love.plot -> eval.parent -> eval -> eval -> love.plot - Execution halted - ``` - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - --- re-building ‘cobalt.Rmd’ using rmarkdown - - Quitting from lines 347-366 [unnamed-chunk-17] (cobalt.Rmd) - Error: processing vignette 'cobalt.Rmd' failed with diagnostics: - attempt to select less than one element in get1index - --- failed re-building ‘cobalt.Rmd’ - - --- re-building ‘longitudinal-treat.Rmd’ using rmarkdown - --- finished re-building ‘longitudinal-treat.Rmd’ - ... - --- finished re-building ‘other-packages.Rmd’ - - --- re-building ‘segmented-data.Rmd’ using rmarkdown - --- finished re-building ‘segmented-data.Rmd’ - - SUMMARY: processing the following files failed: - ‘cobalt.Rmd’ ‘love.plot.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# constructive - -
- -* Version: 0.2.0 -* GitHub: https://github.com/cynkra/constructive -* Source code: https://github.com/cran/constructive -* Date/Publication: 2023-11-13 17:33:24 UTC -* Number of recursive dependencies: 112 - -Run `revdepcheck::cloud_details(, "constructive")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(constructive) - > - > test_check("constructive") - [ FAIL 3 | WARN 0 | SKIP 58 | PASS 10 ] - - ══ Skipped tests (58) ══════════════════════════════════════════════════════════ - ... - 20. │ └─utils::getFromNamespace(fun, pkg) - 21. │ └─base::get(x, envir = ns, inherits = FALSE) - 22. └─base::.handleSimpleError(...) - 23. └─rlang (local) h(simpleError(msg, call)) - 24. └─handlers[[1L]](cnd) - 25. └─rlang::abort(...) - - [ FAIL 3 | WARN 0 | SKIP 58 | PASS 10 ] - Error: Test failures - Execution halted - ``` - -# docxtools - -
- -* Version: 0.3.0 -* GitHub: https://github.com/graphdr/docxtools -* Source code: https://github.com/cran/docxtools -* Date/Publication: 2022-11-12 00:40:02 UTC -* Number of recursive dependencies: 74 - -Run `revdepcheck::cloud_details(, "docxtools")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(docxtools) - > - > test_check("docxtools") - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 22 ] - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test_put.R:21:3'): put_axes() attributes match expectations ─────── - p$layers[[1]]$geom$non_missing_aes not identical to c("linetype", "linewidth", "shape"). - Lengths differ: 2 is not 3 - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 22 ] - Error: Test failures - Execution halted - ``` - -# dynamAedes - -
- -* Version: 2.2.8 -* GitHub: https://github.com/mattmar/dynamAedes -* Source code: https://github.com/cran/dynamAedes -* Date/Publication: 2024-01-08 23:00:03 UTC -* Number of recursive dependencies: 127 - -Run `revdepcheck::cloud_details(, "dynamAedes")` for more info - -
- -## Newly broken - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - --- re-building ‘dynamAedes_01_punctual.Rmd’ using rmarkdown - starting worker pid=5564 on localhost:11930 at 08:51:28.686 - Loading required package: dynamAedes - loaded dynamAedes and set parent environment - - | - |%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%| 100% - Quitting from lines 182-199 [unnamed-chunk-14] (dynamAedes_01_punctual.Rmd) - Error: processing vignette 'dynamAedes_01_punctual.Rmd' failed with diagnostics: - ... - - --- re-building ‘dynamAedes_05_spreader.Rmd’ using rmarkdown - --- finished re-building ‘dynamAedes_05_spreader.Rmd’ - - SUMMARY: processing the following files failed: - ‘dynamAedes_01_punctual.Rmd’ ‘dynamAedes_02_local.Rmd’ - ‘dynamAedes_03_regional.Rmd’ ‘dynamAedes_04_uncompModel.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# EcoDiet - -
- -* Version: 2.0.0 -* GitHub: https://github.com/pyhernvann/EcoDiet -* Source code: https://github.com/cran/EcoDiet -* Date/Publication: 2023-01-06 23:50:02 UTC -* Number of recursive dependencies: 136 - -Run `revdepcheck::cloud_details(, "EcoDiet")` for more info - -
- -## Newly broken - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘convergence_problems.Rmd’ using rmarkdown - --- finished re-building ‘convergence_problems.Rmd’ - - --- re-building ‘introduction_EcoDiet.Rmd’ using rmarkdown - - Quitting from lines 373-374 [unnamed-chunk-35] (introduction_EcoDiet.Rmd) - Error: processing vignette 'introduction_EcoDiet.Rmd' failed with diagnostics: - The `legend.byrow` theme element must be a object. - ... - --- failed re-building ‘introduction_EcoDiet.Rmd’ - - --- re-building ‘realistic_example.Rmd’ using rmarkdown - --- finished re-building ‘realistic_example.Rmd’ - - SUMMARY: processing the following file failed: - ‘introduction_EcoDiet.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# epos - -
- -* Version: 1.0 -* GitHub: NA -* Source code: https://github.com/cran/epos -* Date/Publication: 2021-02-20 01:10:14 UTC -* Number of recursive dependencies: 98 - -Run `revdepcheck::cloud_details(, "epos")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(epos) - > - > test_check("epos") - [ FAIL 1 | WARN 12 | SKIP 0 | PASS 13 ] - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ... - [1] 11 - 9 == 2 - Backtrace: - ▆ - 1. └─testthat::expect_that(length(tanimotobaseline), equals(9)) at test_createTanimotoBaseline.R:39:3 - 2. └─testthat (local) condition(object) - 3. └─testthat::expect_equal(x, expected, ..., expected.label = label) - - [ FAIL 1 | WARN 12 | SKIP 0 | PASS 13 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘testthat’ - All declared Imports should be used. - ``` - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 15 marked UTF-8 strings - ``` - -# feasts - -
- -* Version: 0.3.1 -* GitHub: https://github.com/tidyverts/feasts -* Source code: https://github.com/cran/feasts -* Date/Publication: 2023-03-22 14:20:10 UTC -* Number of recursive dependencies: 101 - -Run `revdepcheck::cloud_details(, "feasts")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘feasts-Ex.R’ failed - The error most likely occurred in: - - > ### Name: gg_season - > ### Title: Seasonal plot - > ### Aliases: gg_season - > - > ### ** Examples - > - > library(tsibble) - ... - 14. ├─rlang::inject(self$extract_key(scale, !!!params)) - 15. └─self$extract_key(...) - 16. └─ggplot2 (local) extract_key(...) - 17. └─Guide$extract_key(scale, aesthetic, ...) - 18. └─ggplot2 (local) extract_key(...) - 19. └─scale$get_labels(breaks) - 20. └─ggplot2 (local) get_labels(..., self = self) - 21. └─cli::cli_abort(...) - 22. └─rlang::abort(...) - Execution halted - ``` - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(feasts) - Loading required package: fabletools - > - > test_check("feasts") - [ FAIL 2 | WARN 0 | SKIP 0 | PASS 98 ] - - ... - 15. └─Guide$extract_key(scale, aesthetic, ...) - 16. └─ggplot2 (local) extract_key(...) - 17. └─scale$get_labels(breaks) - 18. └─ggplot2 (local) get_labels(..., self = self) - 19. └─cli::cli_abort(...) - 20. └─rlang::abort(...) - - [ FAIL 2 | WARN 0 | SKIP 0 | PASS 98 ] - Error: Test failures - Execution halted - ``` - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘feasts.Rmd’ using rmarkdown - - Quitting from lines 49-51 [season-plot] (feasts.Rmd) - Error: processing vignette 'feasts.Rmd' failed with diagnostics: - `breaks` and `labels` have different lengths. - --- failed re-building ‘feasts.Rmd’ - - SUMMARY: processing the following file failed: - ‘feasts.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# fitODBODRshiny - -
- -* Version: 1.0.0 -* GitHub: https://github.com/Amalan-ConStat/fitODBODRshiny,https: -* Source code: https://github.com/cran/fitODBODRshiny -* Date/Publication: 2024-02-09 18:10:02 UTC -* Number of recursive dependencies: 92 - -Run `revdepcheck::cloud_details(, "fitODBODRshiny")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘fitODBODRshiny-Ex.R’ failed - The error most likely occurred in: - - > ### Name: All_Plots - > ### Title: All Plots data - > ### Aliases: All_Plots - > ### Keywords: datasets - > - > ### ** Examples - > - ... - 11. │ │ └─base::withCallingHandlers(...) - 12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) - 13. │ └─l$compute_aesthetics(d, plot) - 14. │ └─ggplot2 (local) compute_aesthetics(..., self = self) - 15. └─base::.handleSimpleError(...) - 16. └─rlang (local) h(simpleError(msg, call)) - 17. └─handlers[[1L]](cnd) - 18. └─cli::cli_abort(...) - 19. └─rlang::abort(...) - Execution halted - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 8.2Mb - sub-directories of 1Mb or more: - data 8.0Mb - ``` - -# fmeffects - -
- -* Version: 0.1.1 -* GitHub: https://github.com/holgstr/fmeffects -* Source code: https://github.com/cran/fmeffects -* Date/Publication: 2023-09-26 15:10:02 UTC -* Number of recursive dependencies: 158 - -Run `revdepcheck::cloud_details(, "fmeffects")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘fmeffects-Ex.R’ failed - The error most likely occurred in: - - > ### Name: ForwardMarginalEffect - > ### Title: R6 Class representing a forward marginal effect (FME) - > ### Aliases: ForwardMarginalEffect - > - > ### ** Examples - > - > - ... - Warning in ggplot2::geom_segment(ggplot2::aes(x = (0.5 * min(x1) + 0.5 * : - All aesthetics have length 1, but the data has 699 rows. - ℹ Did you mean to use `annotate()`? - Warning in ggplot2::geom_segment(ggplot2::aes(y = (0.5 * min(x2) + 0.5 * : - All aesthetics have length 1, but the data has 699 rows. - ℹ Did you mean to use `annotate()`? - Error in as.vector(x, "character") : - cannot coerce type 'environment' to vector of type 'character' - Calls: ... validDetails.text -> as.character -> as.character.default - Execution halted - ``` - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘fme_theory.Rmd’ using rmarkdown - --- finished re-building ‘fme_theory.Rmd’ - - --- re-building ‘fmeffects.Rmd’ using rmarkdown - - Quitting from lines 92-100 [unnamed-chunk-7] (fmeffects.Rmd) - Error: processing vignette 'fmeffects.Rmd' failed with diagnostics: - cannot coerce type 'environment' to vector of type 'character' - --- failed re-building ‘fmeffects.Rmd’ - - SUMMARY: processing the following file failed: - ‘fmeffects.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# genekitr - -
- -* Version: 1.2.5 -* GitHub: https://github.com/GangLiLab/genekitr -* Source code: https://github.com/cran/genekitr -* Date/Publication: 2023-09-07 08:50:09 UTC -* Number of recursive dependencies: 211 - -Run `revdepcheck::cloud_details(, "genekitr")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘genekitr-Ex.R’ failed - The error most likely occurred in: - - > ### Name: plotVenn - > ### Title: Venn plot for groups of genes - > ### Aliases: plotVenn - > - > ### ** Examples - > - > library(ggplot2) - ... - 7. └─ggplot2::ggplotGrob(x) - 8. ├─ggplot2::ggplot_gtable(ggplot_build(x)) - 9. └─ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x)) - 10. └─ggplot2:::plot_theme(plot) - 11. └─ggplot2:::validate_theme(theme) - 12. └─base::mapply(...) - 13. └─ggplot2 (local) ``(...) - 14. └─cli::cli_abort(...) - 15. └─rlang::abort(...) - Execution halted - ``` - -# geomtextpath - -
- -* Version: 0.1.1 -* GitHub: https://github.com/AllanCameron/geomtextpath -* Source code: https://github.com/cran/geomtextpath -* Date/Publication: 2022-08-30 17:00:05 UTC -* Number of recursive dependencies: 95 - -Run `revdepcheck::cloud_details(, "geomtextpath")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(geomtextpath) - Loading required package: ggplot2 - > - > test_check("geomtextpath") - [ FAIL 1 | WARN 7 | SKIP 3 | PASS 460 ] - - ... - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test-coord_curvedpolar.R:76:3'): wrapping first and last labels works as expected ── - make_label(axis_labels$textpath$label[[9]]$glyph) (`actual`) not identical to expression(paste(1, "/", 10)) (`expected`). - - `actual[[1]]`: `paste(1L, "/", 10L)` - `expected[[1]]`: `paste(1, "/", 10)` - - [ FAIL 1 | WARN 7 | SKIP 3 | PASS 460 ] - Error: Test failures - Execution halted - ``` - -# ggedit - -
- -* Version: 0.3.1 -* GitHub: https://github.com/yonicd/ggedit -* Source code: https://github.com/cran/ggedit -* Date/Publication: 2020-06-02 11:50:06 UTC -* Number of recursive dependencies: 96 - -Run `revdepcheck::cloud_details(, "ggedit")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘ggedit-Ex.R’ failed - The error most likely occurred in: - - > ### Name: cloneFacet - > ### Title: Clone ggplot facet object - > ### Aliases: cloneFacet - > - > ### ** Examples - > - > obj=ggplot2::facet_grid(a+b~c+d,scales = 'free',as.table = FALSE,switch = 'x',shrink = FALSE) - > - > cloneFacet(obj) - Error in if (use.names && nt[i] == nc[i]) dQuote(nt[i]) else i : - missing value where TRUE/FALSE needed - Calls: cloneFacet ... lapply -> FUN -> all.equal -> all.equal.list -> paste0 - Execution halted - ``` - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘magrittr’ - All declared Imports should be used. - ``` - -# gghdr - -
- -* Version: 0.2.0 -* GitHub: https://github.com/Sayani07/gghdr -* Source code: https://github.com/cran/gghdr -* Date/Publication: 2022-10-27 15:15:19 UTC -* Number of recursive dependencies: 92 - -Run `revdepcheck::cloud_details(, "gghdr")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘gghdr-Ex.R’ failed - The error most likely occurred in: - - > ### Name: geom_hdr_boxplot - > ### Title: Box plot for the highest density region - > ### Aliases: geom_hdr_boxplot - > - > ### ** Examples - > - > library(ggplot2) - ... - the data. - ℹ Did you forget to specify a `group` aesthetic or to convert a numerical - variable into a factor? - Warning: The `scale_name` argument of `discrete_scale()` is deprecated as of ggplot2 - 3.5.0. - Warning: The S3 guide system was deprecated in ggplot2 3.5.0. - ℹ It has been replaced by a ggproto system that can be extended. - Error in if (guide$reverse) { : argument is of length zero - Calls: ... -> train -> guide_train -> guide_train.prob_guide - Execution halted - ``` - -* checking tests ... ERROR - ``` - Running ‘spelling.R’ - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(gghdr) - > library(ggplot2) - > library(vdiffr) - > - > test_check("gghdr") - ... - 14. └─base::mapply(FUN = f, ..., SIMPLIFY = FALSE) - 15. └─ggplot2 (local) ``(...) - 16. └─guide$train(param, scale, aes, title = labels[[aes]]) - 17. └─ggplot2 (local) train(..., self = self) - 18. ├─ggplot2::guide_train(params, scale, aesthetic) - 19. └─gghdr:::guide_train.prob_guide(params, scale, aesthetic) - - [ FAIL 3 | WARN 6 | SKIP 1 | PASS 8 ] - Error: Test failures - Execution halted - ``` - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘gghdr.Rmd’ using rmarkdown - - Quitting from lines 93-98 [setup] (gghdr.Rmd) - Error: processing vignette 'gghdr.Rmd' failed with diagnostics: - argument is of length zero - --- failed re-building ‘gghdr.Rmd’ - - SUMMARY: processing the following file failed: - ‘gghdr.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# ggiraph - -
- -* Version: 0.8.8 -* GitHub: https://github.com/davidgohel/ggiraph -* Source code: https://github.com/cran/ggiraph -* Date/Publication: 2023-12-09 15:50:02 UTC -* Number of recursive dependencies: 98 - -Run `revdepcheck::cloud_details(, "ggiraph")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘ggiraph-Ex.R’ failed - The error most likely occurred in: - - > ### Name: geom_boxplot_interactive - > ### Title: Create interactive boxplot - > ### Aliases: geom_boxplot_interactive - > - > ### ** Examples - > - > # add interactive boxplot ------- - ... - 24. │ └─ggplot2 (local) draw_panel(..., self = self) - 25. │ └─base::lapply(...) - 26. │ └─ggplot2 (local) FUN(X[[i]], ...) - 27. │ └─self$draw_group(group, panel_params, coord, ...) - 28. └─base::.handleSimpleError(...) - 29. └─rlang (local) h(simpleError(msg, call)) - 30. └─handlers[[1L]](cnd) - 31. └─cli::cli_abort(...) - 32. └─rlang::abort(...) - Execution halted - ``` - -* checking tests ... ERROR - ``` - Running ‘tinytest.R’ - Running the tests in ‘tests/tinytest.R’ failed. - Complete output: - > if (requireNamespace("tinytest", quietly = TRUE)) { - + tinytest::test_package("ggiraph") - + } - - test-annotate_interactive.R... 0 tests - test-annotate_interactive.R... 0 tests - test-annotate_interactive.R... 0 tests - ... - - test-geom_label_interactive.R. 0 tests - test-geom_label_interactive.R. 0 tests - test-geom_label_interactive.R. 0 tests - test-geom_label_interactive.R. 0 tests - test-geom_label_interactive.R. 0 tests - test-geom_label_interactive.R. 8 tests OK Error in sort.int(x, na.last = na.last, decreasing = decreasing, ...) : - 'x' must be atomic - Calls: ... FUN -> eval -> eval -> sort -> sort.default -> sort.int - Execution halted - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 11.9Mb - sub-directories of 1Mb or more: - libs 9.5Mb - ``` - -# ggiraphExtra - -
- -* Version: 0.3.0 -* GitHub: https://github.com/cardiomoon/ggiraphExtra -* Source code: https://github.com/cran/ggiraphExtra -* Date/Publication: 2020-10-06 07:00:02 UTC -* Number of recursive dependencies: 125 - -Run `revdepcheck::cloud_details(, "ggiraphExtra")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘ggiraphExtra-Ex.R’ failed - The error most likely occurred in: - - > ### Name: ggBoxplot - > ### Title: Draw boxplots of a data.frame - > ### Aliases: ggBoxplot - > - > ### ** Examples - > - > require(ggplot2) - ... - 21. │ └─ggplot2 (local) draw_panel(..., self = self) - 22. │ └─base::lapply(...) - 23. │ └─ggplot2 (local) FUN(X[[i]], ...) - 24. │ └─self$draw_group(group, panel_params, coord, ...) - 25. └─base::.handleSimpleError(...) - 26. └─rlang (local) h(simpleError(msg, call)) - 27. └─handlers[[1L]](cnd) - 28. └─cli::cli_abort(...) - 29. └─rlang::abort(...) - Execution halted - ``` - -# ggparallel - -
- -* Version: 0.3.0 -* GitHub: https://github.com/heike/ggparallel -* Source code: https://github.com/cran/ggparallel -* Date/Publication: 2024-01-29 18:50:06 UTC -* Number of recursive dependencies: 51 - -Run `revdepcheck::cloud_details(, "ggparallel")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview - > # * https://testthat.r-lib.org/articles/special-files.html - ... - 12. │ └─ggplot2 (local) compute_aesthetics(..., self = self) - 13. └─base::.handleSimpleError(...) - 14. └─rlang (local) h(simpleError(msg, call)) - 15. └─handlers[[1L]](cnd) - 16. └─cli::cli_abort(...) - 17. └─rlang::abort(...) - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] - Error: Test failures - Execution halted - ``` - -# ggprism - -
- -* Version: 1.0.4 -* GitHub: https://github.com/csdaw/ggprism -* Source code: https://github.com/cran/ggprism -* Date/Publication: 2022-11-04 15:20:05 UTC -* Number of recursive dependencies: 106 - -Run `revdepcheck::cloud_details(, "ggprism")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘ggprism-Ex.R’ failed - The error most likely occurred in: - - > ### Name: annotation_ticks - > ### Title: Add ticks as ggplot annotation - > ### Aliases: annotation_ticks - > - > ### ** Examples - > - > ## Generally it is better to use the guide_prism_minor function. - ... - 2. └─ggplot2:::print.ggplot(x) - 3. ├─ggplot2::ggplot_gtable(data) - 4. └─ggplot2:::ggplot_gtable.ggplot_built(data) - 5. └─ggplot2:::plot_theme(plot) - 6. └─ggplot2:::validate_theme(theme) - 7. └─base::mapply(...) - 8. └─ggplot2 (local) ``(...) - 9. └─cli::cli_abort(...) - 10. └─rlang::abort(...) - Execution halted - ``` - -* checking tests ... ERROR - ``` - Running ‘tinytest.R’ - Running the tests in ‘tests/tinytest.R’ failed. - Complete output: - > - > if ( requireNamespace("tinytest", quietly=TRUE) ){ - + tinytest::test_package("ggprism") - + } - - test-add_pvalue.R............. 0 tests - test-add_pvalue.R............. 0 tests - ... - test-annotation_ticks.R....... 21 tests OK 0.9s - - test-guide_prism_bracket.R.... 0 tests - test-guide_prism_bracket.R.... 0 tests - test-guide_prism_bracket.R.... 0 tests - test-guide_prism_bracket.R.... 0 tests - test-guide_prism_bracket.R.... 0 tests - test-guide_prism_bracket.R.... 1 tests OK Error in if (msg != "") { : the condition has length > 1 - Calls: ... lapply -> FUN -> eval -> eval -> expect_silent -> fun - Execution halted - ``` - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - --- re-building ‘axes.Rmd’ using rmarkdown - - Quitting from lines 38-48 [unnamed-chunk-2] (axes.Rmd) - Error: processing vignette 'axes.Rmd' failed with diagnostics: - classes have been rewritten as classes. - The old S3 guide methods have been superseded. - --- failed re-building ‘axes.Rmd’ - - --- re-building ‘colours.Rmd’ using rmarkdown - ... - Error: processing vignette 'themes.Rmd' failed with diagnostics: - The `legend.text.align` theme element is not defined in the element - hierarchy. - --- failed re-building ‘themes.Rmd’ - - SUMMARY: processing the following files failed: - ‘axes.Rmd’ ‘colours.Rmd’ ‘ggprism.Rmd’ ‘pvalues.Rmd’ ‘themes.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# ggraph - -
- -* Version: 2.1.0 -* GitHub: https://github.com/thomasp85/ggraph -* Source code: https://github.com/cran/ggraph -* Date/Publication: 2022-10-09 20:33:19 UTC -* Number of recursive dependencies: 100 - -Run `revdepcheck::cloud_details(, "ggraph")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘ggraph-Ex.R’ failed - The error most likely occurred in: - - > ### Name: geom_edge_density - > ### Title: Show edges as a density map - > ### Aliases: geom_edge_density - > - > ### ** Examples - > - > require(tidygraph) - ... - ℹ This can happen when ggplot fails to infer the correct grouping structure in - the data. - ℹ Did you forget to specify a `group` aesthetic or to convert a numerical - variable into a factor? - Warning: Raster pixels are placed at uneven horizontal intervals and will be shifted - ℹ Consider using `geom_tile()` instead. - Warning: Raster pixels are placed at uneven horizontal intervals and will be shifted - ℹ Consider using `geom_tile()` instead. - Error: Unknown colour name: TRUE - Execution halted - ``` - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘Edges.Rmd’ using rmarkdown - - Quitting from lines 142-145 [unnamed-chunk-7] (Edges.Rmd) - Error: processing vignette 'Edges.Rmd' failed with diagnostics: - Unknown colour name: TRUE - --- failed re-building ‘Edges.Rmd’ - - --- re-building ‘Layouts.Rmd’ using rmarkdown - ... - --- finished re-building ‘Nodes.Rmd’ - - --- re-building ‘tidygraph.Rmd’ using rmarkdown - --- finished re-building ‘tidygraph.Rmd’ - - SUMMARY: processing the following file failed: - ‘Edges.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -## In both - -* checking C++ specification ... NOTE - ``` - Specified C++11: please drop specification unless essential - ``` - -* checking installed package size ... NOTE - ``` - installed size is 11.0Mb - sub-directories of 1Mb or more: - doc 3.5Mb - libs 5.9Mb - ``` - -# ggside - -
- -* Version: 0.2.3 -* GitHub: https://github.com/jtlandis/ggside -* Source code: https://github.com/cran/ggside -* Date/Publication: 2023-12-10 06:00:06 UTC -* Number of recursive dependencies: 77 - -Run `revdepcheck::cloud_details(, "ggside")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘ggside-Ex.R’ failed - The error most likely occurred in: - - > ### Name: geom_xsidebar - > ### Title: Side bar Charts - > ### Aliases: geom_xsidebar geom_*sidebar geom_ysidebar geom_xsidecol - > ### geom_ysidecol - > - > ### ** Examples - > - ... - > p <-ggplot(iris, aes(Sepal.Width, Sepal.Length, color = Species, fill = Species)) + - + geom_point() - > - > #sidebar - uses StatCount - > p + - + geom_xsidebar() + - + geom_ysidebar() - Error in guide$position : object of type 'closure' is not subsettable - Calls: ... panel_guides_grob -> %||% -> guide_for_position -> vapply -> FUN - Execution halted - ``` - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(vdiffr) - > library(ggplot2) - > library(ggside) - Registered S3 method overwritten by 'ggside': - method from - +.gg ggplot2 - ... - • non_aes_mapping_legend/non-aes-color-blue.svg - • non_aes_mapping_legend/non-aes-xcolor-red.svg - • vdiff_irisScatter/collapsed-histo.svg - • vdiff_irisScatter/facetgrid-collapsed-density.svg - • vdiff_irisScatter/facetgrid-histo.svg - • vdiff_irisScatter/facetgrid-side-density.svg - • vdiff_irisScatter/stacked-side-density.svg - • vdiff_irisScatter/yside-histo.svg - Error: Test failures - Execution halted - ``` - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘ggside_aes_mapping.Rmd’ using rmarkdown - - Quitting from lines 78-79 [ggside_legacy_example] (ggside_aes_mapping.Rmd) - Error: processing vignette 'ggside_aes_mapping.Rmd' failed with diagnostics: - object of type 'closure' is not subsettable - --- failed re-building ‘ggside_aes_mapping.Rmd’ - - --- re-building ‘ggside_basic_usage.Rmd’ using rmarkdown - ... - Quitting from lines 73-77 [ggside_summarise_diamond_base] (ggside_basic_usage.Rmd) - Error: processing vignette 'ggside_basic_usage.Rmd' failed with diagnostics: - object of type 'closure' is not subsettable - --- failed re-building ‘ggside_basic_usage.Rmd’ - - SUMMARY: processing the following files failed: - ‘ggside_aes_mapping.Rmd’ ‘ggside_basic_usage.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# ggstance - -
- -* Version: 0.3.6 -* GitHub: https://github.com/lionel-/ggstance -* Source code: https://github.com/cran/ggstance -* Date/Publication: 2022-11-16 00:20:02 UTC -* Number of recursive dependencies: 93 - -Run `revdepcheck::cloud_details(, "ggstance")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > .libPaths() - [1] "/tmp/workdir/ggstance/new/ggstance.Rcheck" - [2] "/tmp/workdir/ggstance/new" - [3] "/opt/R/4.3.1/lib/R/site-library" - [4] "/opt/R/4.3.1/lib/R/library" - > library("testthat") - > library("ggstance") - ... - • geoms/geom-boxploth-facet-wrap-with-fill.svg - • geoms/geom-boxploth-with-fill.svg - • geoms/geom-histogramh-position-nudge-with-fill.svg - • geoms/geom-histogramh-position-stack-with-fill.svg - • geoms/geom-pointrangeh-facet-wrap.svg - • geoms/geom-pointrangeh-position-dodgev.svg - • geoms/geom-violinh-draw-quantiles.svg - • geoms/geom-violinh-facet-wrap.svg - Error: Test failures - Execution halted - ``` - -# ggstatsplot - -
- -* Version: 0.12.2 -* GitHub: https://github.com/IndrajeetPatil/ggstatsplot -* Source code: https://github.com/cran/ggstatsplot -* Date/Publication: 2024-01-14 14:30:02 UTC -* Number of recursive dependencies: 166 - -Run `revdepcheck::cloud_details(, "ggstatsplot")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘ggstatsplot-Ex.R’ failed - The error most likely occurred in: - - > ### Name: ggscatterstats - > ### Title: Scatterplot with marginal distributions and statistical results - > ### Aliases: ggscatterstats - > - > ### ** Examples - > - > set.seed(123) - ... - 11. │ │ └─base::withCallingHandlers(...) - 12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) - 13. │ └─l$compute_aesthetics(d, plot) - 14. │ └─ggplot2 (local) compute_aesthetics(..., self = self) - 15. └─base::.handleSimpleError(...) - 16. └─rlang (local) h(simpleError(msg, call)) - 17. └─handlers[[1L]](cnd) - 18. └─cli::cli_abort(...) - 19. └─rlang::abort(...) - Execution halted - ``` - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > # graphics engine changed in this version, and so snapshots generated on - > # previous R version won't work - > if (getRversion() < "4.4.0") { - + library(testthat) - + suppressPackageStartupMessages(library(ggstatsplot)) - + - + test_check("ggstatsplot") - ... - • pairwise-ggsignif/within-non-parametric-all.svg - • pairwise-ggsignif/within-non-parametric-only-non-significant.svg - • pairwise-ggsignif/within-non-parametric-only-significant.svg - • pairwise-ggsignif/within-parametric-all.svg - • pairwise-ggsignif/within-parametric-only-significant.svg - • pairwise-ggsignif/within-robust-all.svg - • pairwise-ggsignif/within-robust-only-non-significant.svg - • pairwise-ggsignif/within-robust-only-significant.svg - Error: Test failures - Execution halted - ``` - -# ggtern - -
- -* Version: 3.4.2 -* GitHub: NA -* Source code: https://github.com/cran/ggtern -* Date/Publication: 2023-06-06 11:10:02 UTC -* Number of recursive dependencies: 42 - -Run `revdepcheck::cloud_details(, "ggtern")` for more info - -
- -## Newly broken - -* checking whether package ‘ggtern’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘chemometrics’ - ``` - -## In both - -* checking package dependencies ... NOTE - ``` - Package which this enhances but not available for checking: ‘sp’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ggtern’ ... -** package ‘ggtern’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** demo -** inst -** byte-compile and prepare package for lazy loading -Error in get(x, envir = ns, inherits = FALSE) : - object 'build_guides' not found -Error: unable to load R code in package ‘ggtern’ -Execution halted -ERROR: lazy loading failed for package ‘ggtern’ -* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’ - - -``` -### CRAN - -``` -* installing *source* package ‘ggtern’ ... -** package ‘ggtern’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** demo -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (ggtern) - - -``` -# ghibli - -
- -* Version: 0.3.3 -* GitHub: https://github.com/ewenme/ghibli -* Source code: https://github.com/cran/ghibli -* Date/Publication: 2022-08-26 13:52:03 UTC -* Number of recursive dependencies: 72 - -Run `revdepcheck::cloud_details(, "ghibli")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(ghibli) - > - > test_check("ghibli") - [ FAIL 2 | WARN 1 | SKIP 0 | PASS 8 ] - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test-scales.R:40:3'): scale_colour_ghibli_d fails as expected ───── - `base_color_plot + scale_colour_ghibli_d()` did not throw an error. - ── Failure ('test-scales.R:67:3'): scale_fill_ghibli_d fails as expected ─────── - `base_fill_plot + scale_fill_ghibli_d()` did not throw an error. - - [ FAIL 2 | WARN 1 | SKIP 0 | PASS 8 ] - Error: Test failures - Execution halted - ``` - -# glancedata - -
- -* Version: 1.0.1 -* GitHub: NA -* Source code: https://github.com/cran/glancedata -* Date/Publication: 2019-11-22 23:10:05 UTC -* Number of recursive dependencies: 109 - -Run `revdepcheck::cloud_details(, "glancedata")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘spelling.R’ - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(glancedata) - > - > test_check("glancedata") - [ FAIL 5 | WARN 4 | SKIP 0 | PASS 13 ] - - ... - `expected`: TRUE - ── Failure ('test-plot_numerical_vars.R:37:3'): qqplot is a list of length 9 ─── - mymode == "list" & mylength == 9 is not TRUE - - `actual`: FALSE - `expected`: TRUE - - [ FAIL 5 | WARN 4 | SKIP 0 | PASS 13 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking LazyData ... NOTE - ``` - 'LazyData' is specified without a 'data' directory - ``` - -# grafify - -
- -* Version: 4.0 -* GitHub: https://github.com/ashenoy-cmbi/grafify -* Source code: https://github.com/cran/grafify -* Date/Publication: 2023-10-07 11:10:02 UTC -* Number of recursive dependencies: 107 - -Run `revdepcheck::cloud_details(, "grafify")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(grafify) - Loading required package: ggplot2 - > library(rlang) - - Attaching package: 'rlang' - - ... - ── Error ('test-scale_colour_grafify.R:20:3'): Check colour and fill scales ──── - Error in `expect_match(db1$scales$scales[[1]]$scale_name, "muted")`: is.character(act$val) is not TRUE - Backtrace: - ▆ - 1. └─testthat::expect_match(db1$scales$scales[[1]]$scale_name, "muted") at test-scale_colour_grafify.R:20:3 - 2. └─base::stopifnot(is.character(act$val)) - - [ FAIL 21 | WARN 22 | SKIP 0 | PASS 225 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 5.7Mb - sub-directories of 1Mb or more: - help 5.4Mb - ``` - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘gratia’ - ``` - -# inTextSummaryTable - -
- -* Version: 3.3.1 -* GitHub: https://github.com/openanalytics/inTextSummaryTable -* Source code: https://github.com/cran/inTextSummaryTable -* Date/Publication: 2023-09-12 10:20:02 UTC -* Number of recursive dependencies: 121 - -Run `revdepcheck::cloud_details(, "inTextSummaryTable")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(inTextSummaryTable) - > - > test_check("inTextSummaryTable") - [ FAIL 2 | WARN 167 | SKIP 0 | PASS 991 ] - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test_subjectProfileSummaryPlot-general.R:25:2'): The plot is correctly facetted based on a variable ── - `... <- NULL` produced warnings. - ── Failure ('test_subjectProfileSummaryPlot-table.R:356:2'): The size of the points (in the legend) is correctly set ── - gg$guides$colour$override.aes$size not equal to `pointSize`. - target is NULL, current is numeric - - [ FAIL 2 | WARN 167 | SKIP 0 | PASS 991 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 10.9Mb - sub-directories of 1Mb or more: - doc 9.9Mb - ``` - -# LMoFit - -
- -* Version: 0.1.6 -* GitHub: NA -* Source code: https://github.com/cran/LMoFit -* Date/Publication: 2020-11-26 11:10:02 UTC -* Number of recursive dependencies: 65 - -Run `revdepcheck::cloud_details(, "LMoFit")` for more info - -
- -## Newly broken - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘LMoFit.Rmd’ using rmarkdown - - Quitting from lines 236-237 [unnamed-chunk-15] (LMoFit.Rmd) - Error: processing vignette 'LMoFit.Rmd' failed with diagnostics: - Problem while computing aesthetics. - ℹ Error occurred in the 1st layer. - Caused by error in `scales_add_defaults()`: - ! could not find function "scales_add_defaults" - --- failed re-building ‘LMoFit.Rmd’ - - SUMMARY: processing the following file failed: - ‘LMoFit.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# manydata - -
- -* Version: 0.8.3 -* GitHub: https://github.com/globalgov/manydata -* Source code: https://github.com/cran/manydata -* Date/Publication: 2023-06-15 11:30:03 UTC -* Number of recursive dependencies: 134 - -Run `revdepcheck::cloud_details(, "manydata")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(manydata) - > - > test_check("manydata") - There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 5 matched observations by manyID variable across datasets in database.There were 116 matched observations by ID variable across datasets in database.There were 116 matched observations by ID variable across datasets in database.There were 116 matched observations by ID variable across datasets in database.There were 116 matched observations by ID variable across datasets in database.[ FAIL 3 | WARN 4 | SKIP 0 | PASS 111 ] - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ... - `db` has length 11, not length 9. - ── Failure ('test_db.R:6:3'): dbplot() returns the correct output format ─────── - Names of `db` ('data', 'layers', 'scales', 'guides', 'mapping', 'theme', 'coordinates', 'facet', 'plot_env', 'layout', 'labels') don't match 'data', 'layers', 'scales', 'mapping', 'theme', 'coordinates', 'facet', 'plot_env', 'labels' - ── Failure ('test_releases.R:8:3'): Plotting function visualises historical - milestones/releases of a repository ── - `testplot` has length 11, not length 9. - - [ FAIL 3 | WARN 4 | SKIP 0 | PASS 111 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 3 marked UTF-8 strings - ``` - -# MiscMetabar - -
- -* Version: 0.7.9 -* GitHub: https://github.com/adrientaudiere/MiscMetabar -* Source code: https://github.com/cran/MiscMetabar -* Date/Publication: 2024-02-17 21:10:16 UTC -* Number of recursive dependencies: 414 - -Run `revdepcheck::cloud_details(, "MiscMetabar")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘MiscMetabar-Ex.R’ failed - The error most likely occurred in: - - > ### Name: upset_pq - > ### Title: Make upset plot for phyloseq object. - > ### Aliases: upset_pq - > - > ### ** Examples - > - > - ... - 7. └─ggplot2::ggplotGrob(x) - 8. ├─ggplot2::ggplot_gtable(ggplot_build(x)) - 9. └─ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x)) - 10. └─ggplot2:::plot_theme(plot) - 11. └─ggplot2:::validate_theme(theme) - 12. └─base::mapply(...) - 13. └─ggplot2 (local) ``(...) - 14. └─cli::cli_abort(...) - 15. └─rlang::abort(...) - Execution halted - ``` - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘MiscMetabar.Rmd’ using rmarkdown - - Quitting from lines 68-69 [unnamed-chunk-4] (MiscMetabar.Rmd) - Error: processing vignette 'MiscMetabar.Rmd' failed with diagnostics: - The `legend.text.align` theme element is not defined in the element - hierarchy. - --- failed re-building ‘MiscMetabar.Rmd’ - - SUMMARY: processing the following file failed: - ‘MiscMetabar.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# miWQS - -
- -* Version: 0.4.4 -* GitHub: https://github.com/phargarten2/miWQS -* Source code: https://github.com/cran/miWQS -* Date/Publication: 2021-04-02 21:50:02 UTC -* Number of recursive dependencies: 152 - -Run `revdepcheck::cloud_details(, "miWQS")` for more info - -
- -## Newly broken - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - --- re-building ‘README.Rmd’ using rmarkdown - tlmgr: package repository https://ctan.mirrors.hoobly.com/systems/texlive/tlnet (verified) - [1/2, ??:??/??:??] install: biblatex [249k] - [2/2, 00:00/00:00] install: logreq [4k] - running mktexlsr ... - done running mktexlsr. - tlmgr: package log updated: /opt/TinyTeX/texmf-var/web2c/tlmgr.log - tlmgr: command log updated: /opt/TinyTeX/texmf-var/web2c/tlmgr-commands.log - tlmgr: package repository https://ctan.mirrors.hoobly.com/systems/texlive/tlnet (verified) - ... - Warning: (biblatex) and rerun LaTeX afterwards. - Error: processing vignette 'README.Rmd' failed with diagnostics: - Failed to build the bibliography via biber - --- failed re-building ‘README.Rmd’ - - SUMMARY: processing the following file failed: - ‘README.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -## Newly fixed - -* checking re-building of vignette outputs ... WARNING - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘README.Rmd’ using rmarkdown - - tlmgr: Remote database (revision 69978 of the texlive-scripts package) - seems to be older than the local installation (rev 70006 of - texlive-scripts); please use a different mirror and/or wait a day or two. - - Warning in system2("tlmgr", args, ...) : - running command ''tlmgr' search --file --global '/biblatex.sty'' had status 1 - ... - - Error: processing vignette 'README.Rmd' failed with diagnostics: - LaTeX failed to compile /tmp/workdir/miWQS/old/miWQS.Rcheck/vign_test/miWQS/vignettes/README.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See README.log for more info. - --- failed re-building ‘README.Rmd’ - - SUMMARY: processing the following file failed: - ‘README.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# NAIR - -
- -* Version: 1.0.3 -* GitHub: https://github.com/mlizhangx/Network-Analysis-for-Repertoire-Sequencing- -* Source code: https://github.com/cran/NAIR -* Date/Publication: 2024-01-09 17:00:02 UTC -* Number of recursive dependencies: 86 - -Run `revdepcheck::cloud_details(, "NAIR")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(NAIR) - Welcome to NAIR: Network Analysis of Immune Repertoire. - Get started using `vignette("NAIR")`, or by visiting - https://mlizhangx.github.io/Network-Analysis-for-Repertoire-Sequencing-/ - > - > test_check("NAIR") - ... - `expected` is a character vector ('UMIs') - ── Failure ('test_functions.R:1419:3'): plots legends behave correctly ───────── - sc_net$plots$SampleID$guides$size$name (`actual`) not equal to "legend" (`expected`). - - `actual` is NULL - `expected` is a character vector ('legend') - - [ FAIL 48 | WARN 0 | SKIP 0 | PASS 1171 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 8.1Mb - sub-directories of 1Mb or more: - libs 6.6Mb - ``` - -# OpenLand - -
- -* Version: 1.0.2 -* GitHub: https://github.com/reginalexavier/OpenLand -* Source code: https://github.com/cran/OpenLand -* Date/Publication: 2021-11-02 07:20:02 UTC -* Number of recursive dependencies: 121 - -Run `revdepcheck::cloud_details(, "OpenLand")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(OpenLand) - > - > test_check("OpenLand") - [ FAIL 2 | WARN 1 | SKIP 0 | PASS 110 ] - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ... - Actual value: "List of 11\\n \$ data : tibble \[200 × 5\] \(S3: tbl_df/tbl/data\.frame\)\\n \.\.\$ Period : chr \[1:200\] "2000-2001" "2000-2001" "2000-2001" "2000-2001" \.\.\.\\n \.\.\$ area_gross: num \[1:200\] 0\.000388 0\.000379 0\.00038 0\.000411 0\.000403 0\.000416 0\.000368 0\.000445 0\.000387 0\.000399 \.\.\.\\n \.\.\$ From : Factor w/ 5 levels "GUP","OZS","PSN",\.\.: 3 3 3 3 4 4 4 4 2 2 \.\.\.\\n \.\.\$ To : Factor w/ 5 levels "GUP","OZS","PSN",\.\.: 4 2 1 5 3 2 1 5 3 4 \.\.\.\\n \.\.\$ changes : chr \[1:200\] "Gain" "Gain" "Gain" "Gain" \.\.\.\\n \$ layers :List of 4\\n \.\.\$ :Classes 'LayerInstance', 'Layer', 'ggproto', 'gg' \\n aes_params: list\\n compute_aesthetics: function\\n compute_geom_1: function\\n compute_geom_2: function\\n compute_position: function\\n compute_statistic: function\\n computed_geom_params: NULL\\n computed_mapping: NULL\\n computed_stat_params: NULL\\n constructor: call\\n data: waiver\\n draw_geom: function\\n finish_statistics: function\\n geom: \\n aesthetics: function\\n default_aes: uneval\\n draw_group: function\\n draw_key: function\\n draw_layer: function\\n draw_panel: function\\n extra_params: just na\.rm orientation\\n handle_na: function\\n non_missing_aes: xmin xmax ymin ymax\\n optional_aes: \\n parameters: function\\n rename_size: TRUE\\n required_aes: x y\\n setup_data: function\\n setup_params: function\\n use_defaults: function\\n super: \\n geom_params: list\\n inherit\.aes: TRUE\\n layer_data: function\\n map_statistic: function\\n mapping: uneval\\n position: \\n compute_layer: function\\n compute_panel: function\\n fill: FALSE\\n required_aes: \\n reverse: FALSE\\n setup_data: function\\n setup_params: function\\n type: NULL\\n vjust: 1\\n super: \\n print: function\\n setup_layer: function\\n show\.legend: NA\\n stat: \\n aesthetics: function\\n compute_group: function\\n compute_layer: function\\n compute_panel: function\\n default_aes: uneval\\n dropped_aes: \\n extra_params: na\.rm\\n finish_layer: function\\n non_missing_aes: \\n optional_aes: \\n parameters: function\\n required_aes: \\n retransform: TRUE\\n setup_data: function\\n setup_params: function\\n super: \\n stat_params: list\\n super: \\n \.\.\$ :Classes 'LayerInstance', 'Layer', 'ggproto', 'gg' \\n aes_params: list\\n compute_aesthetics: function\\n compute_geom_1: function\\n compute_geom_2: function\\n compute_position: function\\n compute_statistic: function\\n computed_geom_params: NULL\\n computed_mapping: NULL\\n computed_stat_params: NULL\\n constructor: call\\n data: tbl_df, tbl, data\.frame\\n draw_geom: function\\n finish_statistics: function\\n geom: \\n aesthetics: function\\n default_aes: uneval\\n draw_group: function\\n draw_key: function\\n draw_layer: function\\n draw_panel: function\\n extra_params: just na\.rm orientation\\n handle_na: function\\n non_missing_aes: xmin xmax ymin ymax\\n optional_aes: \\n parameters: function\\n rename_size: TRUE\\n required_aes: x y\\n setup_data: function\\n setup_params: function\\n use_defaults: function\\n super: \\n geom_params: list\\n inherit\.aes: FALSE\\n layer_data: function\\n map_statistic: function\\n mapping: uneval\\n position: \\n compute_layer: function\\n compute_panel: function\\n fill: FALSE\\n required_aes: \\n reverse: FALSE\\n setup_data: function\\n setup_params: function\\n type: NULL\\n vjust: 1\\n super: \\n print: function\\n setup_layer: function\\n show\.legend: NA\\n stat: \\n aesthetics: function\\n compute_group: function\\n compute_layer: function\\n compute_panel: function\\n default_aes: uneval\\n dropped_aes: \\n extra_params: na\.rm\\n finish_layer: function\\n non_missing_aes: \\n optional_aes: \\n parameters: function\\n required_aes: \\n retransform: TRUE\\n setup_data: function\\n setup_params: function\\n super: \\n stat_params: list\\n super: \\n \.\.\$ :Classes 'LayerInstance', 'Layer', 'ggproto', 'gg' \\n aes_params: list\\n compute_aesthetics: function\\n compute_geom_1: function\\n compute_geom_2: function\\n compute_position: function\\n compute_statistic: function\\n computed_geom_params: NULL\\n computed_mapping: NULL\\n computed_stat_params: NULL\\n constructor: call\\n data: tbl_df, tbl, data\.frame\\n draw_geom: function\\n finish_statistics: function\\n geom: \\n aesthetics: function\\n default_aes: uneval\\n draw_group: function\\n draw_key: function\\n draw_layer: function\\n draw_panel: function\\n extra_params: na\.rm\\n handle_na: function\\n non_missing_aes: linetype linewidth\\n optional_aes: \\n parameters: function\\n rename_size: TRUE\\n required_aes: x y xend\|yend\\n setup_data: function\\n setup_params: function\\n use_defaults: function\\n super: \\n geom_params: list\\n inherit\.aes: TRUE\\n layer_data: function\\n map_statistic: function\\n mapping: uneval\\n position: \\n compute_layer: function\\n compute_panel: function\\n required_aes: \\n setup_data: function\\n setup_params: function\\n super: \\n print: function\\n setup_layer: function\\n show\.legend: NA\\n stat: \\n aesthetics: function\\n compute_group: function\\n compute_layer: function\\n compute_panel: function\\n default_aes: uneval\\n dropped_aes: \\n extra_params: na\.rm\\n finish_layer: function\\n non_missing_aes: \\n optional_aes: \\n parameters: function\\n required_aes: \\n retransform: TRUE\\n setup_data: function\\n setup_params: function\\n super: \\n stat_params: list\\n super: \\n \.\.\$ :Classes 'LayerInstance', 'Layer', 'ggproto', 'gg' \\n aes_params: list\\n compute_aesthetics: function\\n compute_geom_1: function\\n compute_geom_2: function\\n compute_position: function\\n compute_statistic: function\\n computed_geom_params: NULL\\n computed_mapping: NULL\\n computed_stat_params: NULL\\n constructor: call\\n data: data\.frame\\n draw_geom: function\\n finish_statistics: function\\n geom: \\n aesthetics: function\\n check_constant_aes: FALSE\\n default_aes: uneval\\n draw_group: function\\n draw_key: function\\n draw_layer: function\\n draw_panel: function\\n extra_params: na\.rm\\n handle_na: function\\n non_missing_aes: \\n optional_aes: \\n parameters: function\\n rename_size: TRUE\\n required_aes: yintercept\\n setup_data: function\\n setup_params: function\\n use_defaults: function\\n super: \\n geom_params: list\\n inherit\.aes: FALSE\\n layer_data: function\\n map_statistic: function\\n mapping: uneval\\n position: \\n compute_layer: function\\n compute_panel: function\\n required_aes: \\n setup_data: function\\n setup_params: function\\n super: \\n print: function\\n setup_layer: function\\n show\.legend: FALSE\\n stat: \\n aesthetics: function\\n compute_group: function\\n compute_layer: function\\n compute_panel: function\\n default_aes: uneval\\n dropped_aes: \\n extra_params: na\.rm\\n finish_layer: function\\n non_missing_aes: \\n optional_aes: \\n parameters: function\\n required_aes: \\n retransform: TRUE\\n setup_data: function\\n setup_params: function\\n super: \\n stat_params: list\\n super: \\n \$ scales :Classes 'ScalesList', 'ggproto', 'gg' \\n add: function\\n add_defaults: function\\n add_missing: function\\n backtransform_df: function\\n clone: function\\n find: function\\n get_scales: function\\n has_scale: function\\n input: function\\n map_df: function\\n n: function\\n non_position_scales: function\\n scales: list\\n train_df: function\\n transform_df: function\\n super: \\n \$ guides :Classes 'Guides', 'ggproto', 'gg' \\n add: function\\n assemble: function\\n build: function\\n draw: function\\n get_custom: function\\n get_guide: function\\n get_params: function\\n get_position: function\\n guides: NULL\\n merge: function\\n missing: \\n add_title: function\\n arrange_layout: function\\n assemble_drawing: function\\n available_aes: any\\n build_decor: function\\n build_labels: function\\n build_ticks: function\\n build_title: function\\n draw: function\\n draw_early_exit: function\\n elements: list\\n extract_decor: function\\n extract_key: function\\n extract_params: function\\n get_layer_key: function\\n hashables: list\\n measure_grobs: function\\n merge: function\\n override_elements: function\\n params: list\\n process_layers: function\\n setup_elements: function\\n setup_params: function\\n train: function\\n transform: function\\n super: \\n package_box: function\\n print: function\\n process_layers: function\\n setup: function\\n subset_guides: function\\n train: function\\n update_params: function\\n super: \\n \$ mapping :List of 2\\n \.\.\$ x: language ~To\\n \.\. \.\.- attr\(\*, "\.Environment"\)= \\n \.\.\$ y: language ~area_gross\\n \.\. \.\.- attr\(\*, "\.Environment"\)= \\n \.\.- attr\(\*, "class"\)= chr "uneval"\\n \$ theme :List of 1\\n \.\.\$ plot\.title:List of 11\\n \.\. \.\.\$ family : NULL\\n \.\. \.\.\$ face : NULL\\n \.\. \.\.\$ colour : NULL\\n \.\. \.\.\$ size : NULL\\n \.\. \.\.\$ hjust : num 0\.5\\n \.\. \.\.\$ vjust : NULL\\n \.\. \.\.\$ angle : NULL\\n \.\. \.\.\$ lineheight : NULL\\n \.\. \.\.\$ margin : NULL\\n \.\. \.\.\$ debug : NULL\\n \.\. \.\.\$ inherit\.blank: logi FALSE\\n \.\. \.\.- attr\(\*, "class"\)= chr \[1:2\] "element_text" "element"\\n \.\.- attr\(\*, "complete"\)= logi FALSE\\n \.\.- attr\(\*, "validate"\)= logi TRUE\\n \$ coordinates:Classes 'CoordCartesian', 'Coord', 'ggproto', 'gg' \\n aspect: function\\n backtransform_range: function\\n clip: on\\n default: TRUE\\n distance: function\\n expand: TRUE\\n is_free: function\\n is_linear: function\\n labels: function\\n limits: list\\n modify_scales: function\\n range: function\\n render_axis_h: function\\n render_axis_v: function\\n render_bg: function\\n render_fg: function\\n setup_data: function\\n setup_layout: function\\n setup_panel_guides: function\\n setup_panel_params: function\\n setup_params: function\\n train_panel_guides: function\\n transform: function\\n super: \\n \$ facet :Classes 'FacetNull', 'Facet', 'ggproto', 'gg' \\n compute_layout: function\\n draw_back: function\\n draw_front: function\\n draw_labels: function\\n draw_panels: function\\n finish_data: function\\n init_scales: function\\n map_data: function\\n params: list\\n setup_data: function\\n setup_params: function\\n shrink: TRUE\\n train_scales: function\\n vars: function\\n super: \\n \$ plot_env : \\n \$ layout :Classes 'Layout', 'ggproto', 'gg' \\n coord: NULL\\n coord_params: list\\n facet: NULL\\n facet_params: list\\n finish_data: function\\n get_scales: function\\n layout: NULL\\n map_position: function\\n panel_params: NULL\\n panel_scales_x: NULL\\n panel_scales_y: NULL\\n render: function\\n render_labels: function\\n reset_scales: function\\n resolve_label: function\\n setup: function\\n setup_panel_guides: function\\n setup_panel_params: function\\n train_position: function\\n super: \\n \$ labels :List of 7\\n \.\.\$ title : NULL\\n \.\.\$ y : chr "Area \(Km2\)"\\n \.\.\$ x : chr "LUC category"\\n \.\.\$ fill : chr "Changes"\\n \.\.\$ xend : chr "as\.numeric\(To\) \+ 0\.3"\\n \.\.\$ yend : chr "area"\\n \.\.\$ yintercept: chr "yintercept"\\n - attr\(\*, "class"\)= chr \[1:2\] "gg" "ggplot"" - Backtrace: - ▆ - 1. └─testthat::expect_output(...) at test_plots.R:59:3 - 2. └─testthat::expect_match(...) - 3. └─testthat:::expect_match_(...) - - [ FAIL 2 | WARN 1 | SKIP 0 | PASS 110 ] - Error: Test failures - Execution halted - ``` - -# platetools - -
- -* Version: 0.1.5 -* GitHub: https://github.com/swarchal/platetools -* Source code: https://github.com/cran/platetools -* Date/Publication: 2021-06-03 12:00:02 UTC -* Number of recursive dependencies: 48 - -Run `revdepcheck::cloud_details(, "platetools")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(platetools) - > - > test_check("platetools") - [ FAIL 2 | WARN 1 | SKIP 4 | PASS 187 ] - - ══ Skipped tests (4) ═══════════════════════════════════════════════════════════ - ... - length(out96) not equal to 9L. - 1/1 mismatches - [1] 11 - 9 == 2 - ── Failure ('test-plot_wrapper.R:34:5'): returns expected ggplot object ──────── - names(out96) not equal to c(...). - Lengths differ: 11 is not 9 - - [ FAIL 2 | WARN 1 | SKIP 4 | PASS 187 ] - Error: Test failures - Execution halted - ``` - -# plot3logit - -
- -* Version: 3.1.4 -* GitHub: https://github.com/f-santi/plot3logit -* Source code: https://github.com/cran/plot3logit -* Date/Publication: 2023-12-10 11:30:05 UTC -* Number of recursive dependencies: 111 - -Run `revdepcheck::cloud_details(, "plot3logit")` for more info - -
- -## Newly broken - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘plot3logit-overview.Rmd’ using rmarkdown - - Quitting from lines 231-232 [unnamed-chunk-10] (plot3logit-overview.Rmd) - Error: processing vignette 'plot3logit-overview.Rmd' failed with diagnostics: - could not find function "guides_train" - --- failed re-building ‘plot3logit-overview.Rmd’ - - SUMMARY: processing the following file failed: - ‘plot3logit-overview.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# PTXQC - -
- -* Version: 1.1.0 -* GitHub: https://github.com/cbielow/PTXQC -* Source code: https://github.com/cran/PTXQC -* Date/Publication: 2023-12-15 15:40:03 UTC -* Number of recursive dependencies: 98 - -Run `revdepcheck::cloud_details(, "PTXQC")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘PTXQC-Ex.R’ failed - The error most likely occurred in: - - > ### Name: plot_RatiosPG - > ### Title: Plot ratios of labeled data (e.g. SILAC) from proteinGroups.txt - > ### Aliases: plot_RatiosPG - > - > ### ** Examples - > - > - ... - > y2 = dnorm(x2, mean = -1) - > data = data.frame( x = c(x1,x2), - + y = c(y1,y2), - + col = c(rep("ok", length(x1)), rep("shifted", length(x2))), - + ltype = c(rep("solid", length(x1)), rep("dotted", length(x2)))) - > plot_RatiosPG(data, range(data$x), "Ratio plot", "red", "group") - Error in as.vector(x, "character") : - cannot coerce type 'environment' to vector of type 'character' - Calls: ... validDetails.text -> as.character -> as.character.default - Execution halted - ``` - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(PTXQC) - Loading package PTXQC (version 1.1.0) - > - > ## - > ## calls all code in PTXQC/tests/testthat/test*.R - > ## - ... - 44. ├─grid:::validGrob(g) - 45. └─grid:::validGrob.grob(g) - 46. ├─grid::validDetails(x) - 47. └─grid:::validDetails.text(x) - 48. ├─base::as.character(x$label) - 49. └─base::as.character.default(x$label) - - [ FAIL 1 | WARN 23 | SKIP 0 | PASS 131 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 7.9Mb - sub-directories of 1Mb or more: - doc 4.0Mb - examples 2.6Mb - ``` - -# rabhit - -
- -* Version: 0.2.5 -* GitHub: NA -* Source code: https://github.com/cran/rabhit -* Date/Publication: 2023-02-06 13:32:31 UTC -* Number of recursive dependencies: 135 - -Run `revdepcheck::cloud_details(, "rabhit")` for more info - -
- -## Newly broken - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘RAbHIT-vignette.Rmd’ using rmarkdown - - Quitting from lines 199-201 [unnamed-chunk-8] (RAbHIT-vignette.Rmd) - Error: processing vignette 'RAbHIT-vignette.Rmd' failed with diagnostics: - subscript out of bounds - --- failed re-building ‘RAbHIT-vignette.Rmd’ - - SUMMARY: processing the following file failed: - ‘RAbHIT-vignette.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -## Newly fixed - -* checking re-building of vignette outputs ... WARNING - ``` - Error(s) in re-building vignettes: - --- re-building ‘RAbHIT-vignette.Rmd’ using rmarkdown - - tlmgr: Remote database (revision 69978 of the texlive-scripts package) - seems to be older than the local installation (rev 70006 of - texlive-scripts); please use a different mirror and/or wait a day or two. - - tlmgr update --self - - tlmgr: Remote database (revision 69978 of the texlive-scripts package) - ... - - Error: processing vignette 'RAbHIT-vignette.Rmd' failed with diagnostics: - LaTeX failed to compile /tmp/workdir/rabhit/old/rabhit.Rcheck/vign_test/rabhit/vignettes/RAbHIT-vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See RAbHIT-vignette.log for more info. - --- failed re-building ‘RAbHIT-vignette.Rmd’ - - SUMMARY: processing the following file failed: - ‘RAbHIT-vignette.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -# santaR - -
- -* Version: 1.2.3 -* GitHub: https://github.com/adwolfer/santaR -* Source code: https://github.com/cran/santaR -* Date/Publication: 2022-05-23 23:20:06 UTC -* Number of recursive dependencies: 94 - -Run `revdepcheck::cloud_details(, "santaR")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(santaR) - - This is santaR version 1.2.3 - - > - > test_check("santaR") - ... - 1/1 mismatches - [1] 11 - 9 == 2 - ── Failure ('test_dfSearch-plot_nbTP_histogram.R:69:3'): change dfCuttOff ────── - length(result_nbTPHisto) not equal to 9. - 1/1 mismatches - [1] 11 - 9 == 2 - - [ FAIL 8 | WARN 2 | SKIP 0 | PASS 681 ] - Error: Test failures - Execution halted - ``` - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘DT’ ‘gridExtra’ - All declared Imports should be used. - ``` - -# saros - -
- -* Version: 1.0.1 -* GitHub: https://github.com/NIFU-NO/saros -* Source code: https://github.com/cran/saros -* Date/Publication: 2024-01-26 11:30:02 UTC -* Number of recursive dependencies: 141 - -Run `revdepcheck::cloud_details(, "saros")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘saros-Ex.R’ failed - The error most likely occurred in: - - > ### Name: embed_cat_prop_plot - > ### Title: Embed Interactive Categorical Plot - > ### Aliases: embed_cat_prop_plot - > - > ### ** Examples - > - > embed_cat_prop_plot(data = ex_survey, dep = b_1:b_3) - ... - 16. │ ├─base::tryCatch(...) - 17. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) - 18. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) - 19. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) - 20. │ └─base::withCallingHandlers(...) - 21. ├─ggplot2::merge_element(t2[[item]], t1[[item]]) - 22. └─ggplot2:::merge_element.element(t2[[item]], t1[[item]]) - 23. └─cli::cli_abort("Only elements of the same class can be merged.") - 24. └─rlang::abort(...) - Execution halted - ``` - -* checking tests ... ERROR - ``` - Running ‘spelling.R’ - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(saros) - > - > testthat::test_check("saros") - Starting 2 test processes - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 184 ] - ... - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Error ('test-draft_report.R:4:3'): draft_report ───────────────────────────── - Error in `setup_elements(...)`: Can't merge the `text` theme element. - Caused by error in `merge_element()`: - ! Only elements of the same class can be merged. - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 184 ] - Error: Test failures - Execution halted - ``` - -# scCustomize - -
- -* Version: 2.0.1 -* GitHub: https://github.com/samuel-marsh/scCustomize -* Source code: https://github.com/cran/scCustomize -* Date/Publication: 2023-11-17 19:00:03 UTC -* Number of recursive dependencies: 265 +* Version: 0.2.8 +* GitHub: https://github.com/teunbrand/ggh4x +* Source code: https://github.com/cran/ggh4x +* Date/Publication: 2024-01-23 21:00:02 UTC +* Number of recursive dependencies: 77 -Run `revdepcheck::cloud_details(, "scCustomize")` for more info +Run `revdepcheck::cloud_details(, "ggh4x")` for more info
@@ -2554,261 +16,137 @@ Run `revdepcheck::cloud_details(, "scCustomize")` for more info * checking examples ... ERROR ``` - Running examples in ‘scCustomize-Ex.R’ failed + Running examples in ‘ggh4x-Ex.R’ failed The error most likely occurred in: - > ### Name: Plot_Median_Genes - > ### Title: Plot Median Genes per Cell per Sample - > ### Aliases: Plot_Median_Genes + > ### Name: coord_axes_inside + > ### Title: Cartesian coordinates with interior axes + > ### Aliases: coord_axes_inside > > ### ** Examples > - > library(Seurat) + > # A standard plot ... - 2. └─ggplot2:::print.ggplot(x) - 3. ├─ggplot2::ggplot_gtable(data) - 4. └─ggplot2:::ggplot_gtable.ggplot_built(data) - 5. └─ggplot2:::plot_theme(plot) - 6. └─ggplot2:::validate_theme(theme) - 7. └─base::mapply(...) - 8. └─ggplot2 (local) ``(...) - 9. └─cli::cli_abort(...) - 10. └─rlang::abort(...) + > p + coord_axes_inside() + Theme element `panel.background` is missing + Theme element `panel.grid.minor.y` is missing + Theme element `panel.grid.minor.x` is missing + Theme element `panel.grid.major.y` is missing + Theme element `panel.grid.major.x` is missing + Error in UseMethod("element_grob") : + no applicable method for 'element_grob' applied to an object of class "NULL" + Calls: ... lapply -> FUN -> draw_axis_labels -> exec -> Execution halted ``` -# scdhlm - -
- -* Version: 0.7.2 -* GitHub: https://github.com/jepusto/scdhlm -* Source code: https://github.com/cran/scdhlm -* Date/Publication: 2023-03-12 10:30:02 UTC -* Number of recursive dependencies: 113 - -Run `revdepcheck::cloud_details(, "scdhlm")` for more info - -
- -## Newly broken - * checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) - > library(scdhlm) - Loading required package: nlme + > library(ggh4x) + Loading required package: ggplot2 > - > test_check("scdhlm") - [ FAIL 3 | WARN 0 | SKIP 11 | PASS 261 ] - + > test_check("ggh4x") + Theme element `panel.background` is missing + Theme element `panel.grid.minor.y` is missing ... - 17. ├─base::all.equal(...) - 18. └─base::all.equal.default(...) - 19. └─base::all.equal.list(target, current, ...) - 20. ├─base::all.equal(...) - 21. └─base::all.equal.environment(...) - 22. └─base::as.list.environment(target, all.names = all.names, sorted = TRUE) + 16. └─ggplot2 (local) build_labels(...) + 17. └─base::lapply(...) + 18. └─ggplot2 (local) FUN(X[[i]], ...) + 19. └─ggplot2:::draw_axis_labels(...) + 20. ├─rlang::exec(...) + 21. └─ggplot2 (local) ``(...) - [ FAIL 3 | WARN 0 | SKIP 11 | PASS 261 ] + [ FAIL 1 | WARN 0 | SKIP 18 | PASS 750 ] Error: Test failures Execution halted ``` -# see - -
- -* Version: 0.8.2 -* GitHub: https://github.com/easystats/see -* Source code: https://github.com/cran/see -* Date/Publication: 2024-02-14 14:20:02 UTC -* Number of recursive dependencies: 221 - -Run `revdepcheck::cloud_details(, "see")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘see-Ex.R’ failed - The error most likely occurred in: - - > ### Name: geom_from_list - > ### Title: Create ggplot2 geom(s) from a list - > ### Aliases: geom_from_list geoms_from_list - > - > ### ** Examples - > - > ## Don't show: - ... - 13. │ │ └─base::withCallingHandlers(...) - 14. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) - 15. │ └─l$compute_aesthetics(d, plot) - 16. │ └─ggplot2 (local) compute_aesthetics(..., self = self) - 17. └─base::.handleSimpleError(...) - 18. └─rlang (local) h(simpleError(msg, call)) - 19. └─handlers[[1L]](cnd) - 20. └─cli::cli_abort(...) - 21. └─rlang::abort(...) - Execution halted - ``` - -# spqdep - -
- -* Version: 0.1.3.2 -* GitHub: NA -* Source code: https://github.com/cran/spqdep -* Date/Publication: 2024-02-05 12:30:02 UTC -* Number of recursive dependencies: 113 - -Run `revdepcheck::cloud_details(, "spqdep")` for more info - -
- -## Newly broken - * checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... - --- re-building ‘spq_userguide.Rmd’ using rmarkdown + --- re-building ‘Facets.Rmd’ using rmarkdown + --- finished re-building ‘Facets.Rmd’ + + --- re-building ‘Miscellaneous.Rmd’ using rmarkdown + + Quitting from lines 199-204 [unnamed-chunk-13] (Miscellaneous.Rmd) + Error: processing vignette 'Miscellaneous.Rmd' failed with diagnostics: + no applicable method for 'element_grob' applied to an object of class "NULL" + ... + --- finished re-building ‘Statistics.Rmd’ - Quitting from lines 500-501 [unnamed-chunk-24] (spq_userguide.Rmd) - Error: processing vignette 'spq_userguide.Rmd' failed with diagnostics: - Invalid index: field name 'x_start' not found - --- failed re-building ‘spq_userguide.Rmd’ + --- re-building ‘ggh4x.Rmd’ using rmarkdown + --- finished re-building ‘ggh4x.Rmd’ SUMMARY: processing the following file failed: - ‘spq_userguide.Rmd’ + ‘Miscellaneous.Rmd’ Error: Vignette re-building failed. Execution halted ``` -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘lwgeom’ - All declared Imports should be used. - ``` - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 4 marked UTF-8 strings - ``` - -# TCIU +# MplusAutomation
-* Version: 1.2.4 -* GitHub: https://github.com/SOCR/TCIU -* Source code: https://github.com/cran/TCIU -* Date/Publication: 2023-10-06 16:20:11 UTC -* Number of recursive dependencies: 172 +* Version: 1.1.1 +* GitHub: https://github.com/michaelhallquist/MplusAutomation +* Source code: https://github.com/cran/MplusAutomation +* Date/Publication: 2024-01-30 23:40:02 UTC +* Number of recursive dependencies: 89 -Run `revdepcheck::cloud_details(, "TCIU")` for more info +Run `revdepcheck::cloud_details(, "MplusAutomation")` for more info
## Newly broken -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘tciu-LT-kimesurface.Rmd’ using rmarkdown - - Quitting from lines 159-160 [unnamed-chunk-5] (tciu-LT-kimesurface.Rmd) - Error: processing vignette 'tciu-LT-kimesurface.Rmd' failed with diagnostics: - Problem while computing aesthetics. - ℹ Error occurred in the 1st layer. - Caused by error in `scales_add_defaults()`: - ! could not find function "scales_add_defaults" - ... - --- failed re-building ‘tciu-LT-kimesurface.Rmd’ - - --- re-building ‘tciu-fMRI-analytics.Rmd’ using rmarkdown - --- finished re-building ‘tciu-fMRI-analytics.Rmd’ - - SUMMARY: processing the following file failed: - ‘tciu-LT-kimesurface.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -## In both - * checking installed package size ... NOTE ``` - installed size is 14.6Mb + installed size is 5.4Mb sub-directories of 1Mb or more: - data 1.8Mb - doc 12.3Mb + R 3.1Mb + data 1.0Mb ``` -# tmt +# PlasmaMutationDetector
-* Version: 0.3.1-2 -* GitHub: https://github.com/jansteinfeld/tmt -* Source code: https://github.com/cran/tmt -* Date/Publication: 2022-05-17 09:10:02 UTC -* Number of recursive dependencies: 95 +* Version: 1.7.2 +* GitHub: NA +* Source code: https://github.com/cran/PlasmaMutationDetector +* Date/Publication: 2018-06-11 07:43:09 UTC +* Number of recursive dependencies: 107 -Run `revdepcheck::cloud_details(, "tmt")` for more info +Run `revdepcheck::cloud_details(, "PlasmaMutationDetector")` for more info
## Newly broken -* checking tests ... ERROR +* checking installed package size ... NOTE ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(tmt) - - tmt 0.3.1-2 (2022-05-16) - > - > test_check("tmt") - The following items are specified in the dataset, but not in the submitted mstdesign: ii1 - The following items are specified in the mstdesign, but not in the dataset: i1 - ... - [1] 11 - 9 == 2 - Backtrace: - ▆ - 1. └─testthat::expect_that(length(p), equals(9)) at test-tmt_gmc.R:34:5 - 2. └─testthat (local) condition(object) - 3. └─testthat::expect_equal(x, expected, ..., expected.label = label) - - [ FAIL 1 | WARN 2 | SKIP 0 | PASS 346 ] - Error: Test failures - Execution halted + installed size is 5.1Mb + sub-directories of 1Mb or more: + extdata 4.0Mb ``` -# tvthemes +# Superpower
-* Version: 1.3.2 -* GitHub: https://github.com/Ryo-N7/tvthemes -* Source code: https://github.com/cran/tvthemes -* Date/Publication: 2022-11-17 18:20:02 UTC -* Number of recursive dependencies: 77 +* Version: 0.2.0 +* GitHub: https://github.com/arcaldwell49/Superpower +* Source code: https://github.com/cran/Superpower +* Date/Publication: 2022-05-17 13:50:02 UTC +* Number of recursive dependencies: 112 -Run `revdepcheck::cloud_details(, "tvthemes")` for more info +Run `revdepcheck::cloud_details(, "Superpower")` for more info
@@ -2816,133 +154,76 @@ Run `revdepcheck::cloud_details(, "tvthemes")` for more info * checking tests ... ERROR ``` + Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) - > library(tvthemes) - > library(ggplot2) + > library(Superpower) > - > test_check("tvthemes") - [ FAIL 64 | WARN 3 | SKIP 1 | PASS 768 ] - + > + > test_check("Superpower") + [ FAIL 2 | WARN 18 | SKIP 13 | PASS 397 ] ... - scale_color_avatar(palette = "AirNomads") not equal to scale_colour_avatar(palette = "AirNomads"). - Component "call": target, current do not match when deparsed - Backtrace: - ▆ - 1. └─tvthemes (local) expect_eqNe(scale_color_avatar(palette = "AirNomads"), scale_colour_avatar(palette = "AirNomads")) at test-thelastairbender.R:254:3 - 2. └─testthat::expect_equal(..., check.environment = FALSE) at test-thelastairbender.R:3:16 + 1/1 mismatches + [1] -0.00304 - 0 == -0.00304 + ── Failure ('test_sim_cor.R:38:3'): simulated correlations fit expected values ── + `res5` not equal to 0. + 1/1 mismatches + [1] -0.00322 - 0 == -0.00322 - [ FAIL 64 | WARN 3 | SKIP 1 | PASS 768 ] + [ FAIL 2 | WARN 18 | SKIP 13 | PASS 397 ] Error: Test failures Execution halted ``` -# ufs - -
- -* Version: 0.5.10 -* GitHub: NA -* Source code: https://github.com/cran/ufs -* Date/Publication: 2023-06-09 16:30:03 UTC -* Number of recursive dependencies: 154 - -Run `revdepcheck::cloud_details(, "ufs")` for more info - -
- -## Newly broken +## In both -* checking examples ... ERROR +* checking dependencies in R code ... NOTE ``` - Running examples in ‘ufs-Ex.R’ failed - The error most likely occurred in: - - > ### Name: duoComparisonDiamondPlot - > ### Title: meansComparisonDiamondPlot and duoComparisonDiamondPlot - > ### Aliases: duoComparisonDiamondPlot meansComparisonDiamondPlot - > ### Keywords: hplot - > - > ### ** Examples - > - ... - + items='weight', - + compareBy='feed', - + xbreaks=c(100,200,300,400), - + showData=FALSE); - > duoComparisonDiamondPlot(mtcars, - + items=c('disp', 'hp'), - + compareBy='vs', - + xbreaks=c(100,200, 300, 400)); - Error: Cannot create zero-length unit vector ("unit" subsetting) - Execution halted + Namespaces in Imports field not imported from: + ‘gridExtra’ ‘mvtnorm’ + All declared Imports should be used. ``` -# visR +# xaringanthemer
-* Version: 0.4.0 -* GitHub: https://github.com/openpharma/visR -* Source code: https://github.com/cran/visR -* Date/Publication: 2023-11-20 18:20:02 UTC -* Number of recursive dependencies: 148 +* Version: 0.4.2 +* GitHub: https://github.com/gadenbuie/xaringanthemer +* Source code: https://github.com/cran/xaringanthemer +* Date/Publication: 2022-08-20 18:40:02 UTC +* Number of recursive dependencies: 75 -Run `revdepcheck::cloud_details(, "visR")` for more info +Run `revdepcheck::cloud_details(, "xaringanthemer")` for more info
## Newly broken -* checking examples ... ERROR - ``` - Running examples in ‘visR-Ex.R’ failed - The error most likely occurred in: - - > ### Name: add_highlight - > ### Title: Highlight a specific strata - > ### Aliases: add_highlight add_highlight.ggsurvfit - > - > ### ** Examples - > - > - ... - + visR::estimate_KM(strata = "SEX") %>% - + visR::visr() %>% - + visR::add_CI(alpha = 0.4) %>% - + visR::add_highlight(strata = "M", bg_alpha = 0.2) - Error in FUN(X[[i]], ...) : - The strata you specified has not been found in the provided plot. - Available strata: NULL, NULL - Please adjust and rerun. - Calls: %>% ... add_highlight.ggsurvfit -> -> lapply -> FUN - Execution halted - ``` - * checking tests ... ERROR ``` - Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) - > library(visR) - > library(vdiffr) - > library(survival) + > library(xaringanthemer) > - > test_check("visR") + > test_check("xaringanthemer") + [ FAIL 1 | WARN 18 | SKIP 1 | PASS 308 ] + + ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ ... - dim(grob_orig)[2] == dim(pltlist[[2]])[2] is not FALSE + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-ggplot2.R:267:3'): theme_xaringan_restore_defaults() restores defaults ── + res$after_restore$line_colour (`actual`) not equal to res$original$colour (`expected`). - `actual`: TRUE - `expected`: FALSE + `actual`: "#0088ff" + `expected`: "black" - [ FAIL 12 | WARN 28 | SKIP 27 | PASS 988 ] + [ FAIL 1 | WARN 18 | SKIP 1 | PASS 308 ] Error: Test failures - In addition: Warning message: - closing unused connection 4 (https://raw.githubusercontent.com/vntkumar8/covid-survival/main/data/final.csv) Execution halted ```