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Added lila_separation_multilable_filtering tool #11

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@Andrey170170 Andrey170170 commented Feb 16, 2025

Tool to get multilabel data from the Lila BC dataset

Things to do before it is ready for merge:

  • Test with data
  • Clean up classes
  • Write README.md

Updated package structure, filenames, and references to reflect the new name. Adjusted `pyproject.toml` to rename the project, update dependencies, and modify supported Python versions. These changes ensure consistency and alignment with the new project branding.
Updated all import statements to reference TreeOfLife_toolbox instead of DD_tools for consistency and clarity. Adjusted slurm scripts to align with the new module structure and standardized environment variables for toolbox path configuration.
Revised the project description, added programming language classifiers, and enhanced optional dependencies with 'ruff'. Introduced new keywords and added a script entry point for better usability.
The LILA multi-label separation tool was refactored for improved modularity and moved from `DD_tools` to `TreeOfLife_toolbox`. Updated class structure, documentation, and configurations to align with the new package and enhance clarity and maintainability.
@Andrey170170 Andrey170170 marked this pull request as ready for review May 14, 2025 07:00
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