Added fathom_net_crop_crop_fix tool #6
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Updated package structure, filenames, and references to reflect the new name. Adjusted `pyproject.toml` to rename the project, update dependencies, and modify supported Python versions. These changes ensure consistency and alignment with the new project branding.
Updated all import statements to reference TreeOfLife_toolbox instead of DD_tools for consistency and clarity. Adjusted slurm scripts to align with the new module structure and standardized environment variables for toolbox path configuration.
Revised the project description, added programming language classifiers, and enhanced optional dependencies with 'ruff'. Introduced new keywords and added a script entry point for better usability.
Moved `fathom_net_crop_fix` module from `DD_tools` to `TreeOfLife_toolbox`, updating imports and paths for consistency. Enhanced documentation, improved cropping logic, and incorporated boundary checks to ensure accurate image processing.
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Tool to fix bug caused by
fathom_net_croptoolThings to do before it is ready for merge:
README.md