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It happened because a new jemalloc branch was started over 2014-05-08 instead of 2014-06-05. While the new branch has all the required features, they are disabled because configure script is bundled.
So either configure should be removed completely and constructed by autoconf during build process as usually or it should be regenerated and checked in on the every jemalloc update. The latter perhaps requires a guide for contributors so they to be aware of the issue.