Upgrade scipy to 1.9.x, add meson toolchain

[mkoeppe]

• https://scipy.github.io/devdocs/release.1.9.0.html (released)
  • scipy.optimize.milp (HiGHS MIP solver)
  • https://scipy.github.io/devdocs/release.1.9.0.html#scipy-switched-to-meson-as-its-build-system

This ticket is also the target ticket for https://github.com/FFY00/meson-python/blob/main/.github/workflows/ci-sage.yml

Previous update:

• Update numpy to 1.22.x, scipy 1.8.x, networkx 2.8.x #32423 Update numpy to 1.22.x, scipy 1.8.x, networkx 2.8.x

See also:

• numpy 1.23.x #34110 numpy 1.23.x

Depends on #34572
Depends on #32182

CC: @dimpase @antonio-rojas @kiwifb @orlitzky

Component: packages: standard

Author: Matthias Koeppe

Branch: 853a699

Reviewer: Dima Pasechnik

Issue created by migration from https://trac.sagemath.org/ticket/34081

[mkoeppe]

Dependencies: #32423

[mkoeppe]

Branch: u/mkoeppe/numpy_1_23_x__scipy_1_9_x

[mkoeppe]

Commit: d87212c

[mkoeppe]

Changed dependencies from #32423 to #32423, #33789

[mkoeppe]

Last 10 new commits:

e1998da	Merge #32423
507fc2e	build/pkgs/numpy: Update to 1.23.0
58d62f4	build/bin/write-dockerfile.sh: ADD src/VERSION.txt
99f3617	Merge #34017
3fab415	build/pkgs/numpy: Switch to using .tar.gz
443b3d3	build/pkgs/numpy/spkg-install.in: Fix 32bit build on x86_64
9cd5ea6	Merge #34017
ee79c2e	build/pkgs/numpy/spkg-install.in: Fix 32bit build on x86_64 (fixup)
2534f5a	build/pkgs/numpy/patches/21891.patch: New
d87212c	Merge #32423

[sagetrac-git]

Branch pushed to git repo; I updated commit sha1. Last 10 new commits:

738ab26	build/bin/sage-dist-helpers (sdh_pip_install): Change default to --build-isolation
79c6002	build/bin/sage-dist-helpers (sdh_pip_install): Fall back to --no-build-isolation on error
f6ba526	build/pkgs/tomli/spkg-install.in: Build it with --no-build-isolation
0b744be	Merge #33789
10aaf61	build/pkgs/meson: New
3ca53c9	build/pkgs/pyproject_metadata: New
be09d5a	build/pkgs/ninja: New
3b92d3f	build/pkgs/ninja_build/type: Change to standard
563ba19	build/pkgs/pyproject_metadata/dependencies: Update
bf62474	build/pkgs/meson_python: Update dependencies, spkg-install

[sagetrac-git]

Changed commit from d87212c to bf62474

[mkoeppe]

Changed dependencies from #32423, #33789 to #32423, #33789, #33866

[mkoeppe]

comment:6

[scipy-1.9.0rc1]       hook = backend.prepare_metadata_for_build_wheel
[scipy-1.9.0rc1]   AttributeError: module 'mesonpy' has no attribute 'prepare_metadata_for_build_wheel'
[scipy-1.9.0rc1] 
[scipy-1.9.0rc1]   During handling of the above exception, another exception occurred:
[scipy-1.9.0rc1] 
[}}}

[mkoeppe]

Description changed:

--- 
+++ 
@@ -1,6 +1,8 @@
 - https://numpy.org/doc/stable/release/1.23.0-notes.html# (released)
 - https://scipy.github.io/devdocs/release.1.9.0.html (rc)
   - scipy.optimize.milp (HiGHS MIP solver)
+  - https://scipy.github.io/devdocs/release.1.9.0.html#scipy-switched-to-meson-as-its-build-system
+
 
 Previous update: 
 - #32423 Update numpy to 1.22.x, scipy 1.8.x, networkx 2.8.x

[sagetrac-git]

Changed commit from bf62474 to 22f91fd

[sagetrac-git]

Branch pushed to git repo; I updated commit sha1. This was a forced push. Last 10 new commits:

5f29fb6	build/pkgs/poetry_core: New (tomlkit build dep)
0804b62	build/pkgs/poetry_core/patches/5547.diff_bin: New
0c4d0eb	build/pkgs/hatchling/dependencies: Add pluggy, packaging
3e54474	build/pkgs/pip: Update to 22.1.2
7e9722f	build/pkgs/setuptools_scm: Update to 7.0.2, add typing_extensions as dep
6f72e8c	build/pkgs/wheel: Update to 0.37.1
3e9d4a8	Revert "build/pkgs/setuptools_scm: Update to 7.0.2, add typing_extensions as dep"
5d8111f	build/pkgs/hatchling/SPKG.rst: Add license info
6607401	src/sage/misc/package.py (pip_installed_packages): Make doctests more flexible
22f91fd	Merge #33866

[mkoeppe]

comment:9

Opened scipy/scipy#16536 (BUG: 1.9.0rc1 fails to build on macOS when CXX="g++ -std=gnu++11")

[sagetrac-git]

Changed commit from 22f91fd to 02d9685

[sagetrac-git]

Branch pushed to git repo; I updated commit sha1. New commits:

02d9685

build/pkgs/scipy/spkg-install.in: Remove all old compiler/linker settings, add workaround for https://github.com/scipy/scipy/issues/16536